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Protein engineering and NMR studies of calmodulin

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Abstract

The calcium regulatory protein calmodulin (CaM) plays a role as an on-off switch in the activation of many enzymes and proteins. CaM has a dumbbell shaped structure with two folded domains, which are connected by a flexible linker in solution. The calmodulin-binding domains of the target proteins are contained in 20 residue long amino acid sequences, that share no obvious amino acid sequence homology. In this contribution, we discuss the features of CaM, which allow it to be rather promiscous, and bind effectively to all these distinct domains. In particular, we describe the role of the methionine-rich hydrophobic surfaces of the protein in providing a malleable and sticky surface for binding many hydrophobic peptides. The enzyme activation properties of various Met→Leu mutants of CaM are discussed. In addition, the role of the flexible linker region that connects the two domains is also analyzed. Finally, we describe various NMR and spectroscopic experiments that aid in determining the CaM-bound structures of synthetic peptides containing various CaM-binding domains. All structures analyzed to date are α-helical when bound to CaM, and they interact with CaM only through amino acid sidechains. This form of protein-protein interaction is rather unique, and may contribute to CaM's capacity to bind effectively to such a wide range of distinct partners.

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Abbreviations

CaM:

calmodulin

CD:

circular dichroism

cNOS:

constitutive Nitric Oxide Synthase

FTIR:

Fourier Transform Infrared Spectroscopy

iNOS:

inducible Nitric Oxide Synthase

MLCK:

Myosin Light Chain Kinase

NMR:

Nuclear Magnetic Resonance

nOe:

nuclear Overhauser effect

NOESY:

two dimensional Nuclear Overhauser Effect Spectroscopy

PDE:

cyclic nucleotide phosphodiesterase

SeMet:

selenomethionine

TFE:

trifluoroethanol

TOCSY:

two dimensional Total Correlation Spectroscopy

trnOe:

transferred nuclear Overhauser effect

References

  1. Hiraoki T, Vogel HJ: Structure and function of calcium binding proteins. J Cardiovasc Pharm 10: S14-S31, 1987

    Google Scholar 

  2. Klee CB, Vanaman TC: Calmodulin: Adv Prot Chem 35: 213–321, 1982

    Google Scholar 

  3. Means AR, VanBerkum MFA, Bagshi I, Lu KP, Rasmussen CD: Regulatory functions of calmodulin. Pharmacol Ther 50: 255–270, 1991

    PubMed  Google Scholar 

  4. Silva AJ, Stevens CF, Tonegawa S, Wang Y: Deficient hippocampal longterm potentiation in a-calcium-calmodulin kinase II mutant mice. Science 257: 201–206, 1992

    PubMed  Google Scholar 

  5. Silva AJ, Paylor S, Wehner JM, Tonegawa S: Impaired spatial learning in a-calcium-calmodulin kinase II mutant mice. Science 257: 206–211, 1992

    PubMed  Google Scholar 

  6. Kemp B, Pearson RB: Protein kinase sequence motifs. Tr Biochem Sc 15: 342–346, 1990

    Google Scholar 

  7. Morgan DO, DeBondt HL: Protein kinase regulation: Insights from crystal structure analysis. Curr Opin Cell Biol 6: 239–246, 1994

    PubMed  Google Scholar 

  8. O'Neill KT, DeGrado WF: How calmodulin binds its targets: Sequence independent recognition of amphiphilic a-helices. Tr Biochem Sci 15: 59–64, 1990

    Google Scholar 

  9. Andersson A, Forsén S, Thulin E, Vogel HJ: Cadmium-113 NMR studies of proteolytic fragments of calmodulin, assignment of strong and weak cation binding sites. Biochemistry 22: 2309–2313, 1983

    PubMed  Google Scholar 

  10. Forsén S, Vogel HJ, Drakenberg T: Biophysical studies of calmodulin In ‘Calcium and cell function’ Vol VI (Ed Cheung WY) Academic Press New York, 113–157, 1986

    Google Scholar 

  11. Babu YS, Bugg CE, Cook WJ: Structure of calmodulin refined at 2.2 Å resolution. J Mol Biol 204: 191–204, 1988

    Google Scholar 

  12. Vogel HJ, Lindahl L, Thulin E: Calcium dependent hydrophobic interaction chromatography of calmodulin, troponin C and their proteolytic fragments. FEBS Lett 157: 241–246, 1983

    Google Scholar 

  13. Taylor DA, Sack JS, Maune JF, Beckingham K, Quiocho FA: Structure of recombinant calmodulin from Drosophila refined at 2.2 Å resolution. J Biol Chem 266: 21375–21380, 1991

    PubMed  Google Scholar 

  14. Chattopadhyaya R, Meador WE, Means AR, Quiocho FA: Calmodulin structure refined at 1.7 Å resolution. J Mol Biol 228: 1177–1192, 1992

    PubMed  Google Scholar 

  15. Rao ST, Satyshur KA, Ling KY, Kung C, Sundaralingam M: Structure of Paramecia tetraurelia calmodulin at 1.8 Å resolution. Protein Sc 2: 436–447, 1993

    Google Scholar 

  16. Ikura M, Spera S, Barbato G, Kay LE, Krinks M, Bax A: Secondary structure and sidechain resonance assignments of calmodulin by heteronuclear multidimensional NMR spectroscopy. Biochemistry 30: 9256–9258, 1991

    Google Scholar 

  17. Barbato G, Ikura M, Kay LE, Pastor RW, Bax A: Backbone dynamics of calmodulin studied by15N relaxation using inverse detected NMR spectroscopy: The central helix is flexible. Biochemistry 31, 5269–5278, 1992

    PubMed  Google Scholar 

  18. Bayley PM, Martin SR: The α-helical content of calmodulin is increased by solution conditions favouring protein crystallisation. Biochim Biophys Acta 1160: 16–21, 1992

    PubMed  Google Scholar 

  19. Ikura M, Clore GM, Gronenborn AM, Zhu G, Klee CB, Bax A: Solution structure of a calmodulin-target peptide complex by multidimensional NMR. Science 256: 632–638, 1992

    PubMed  Google Scholar 

  20. Meador WE, Means AR, Quiocho FA: Target enzyme recognition by calmodulin: 2.4 Å structure of a calmodulin-peptide complex. Science 257: 1251–1255, 1992

    PubMed  Google Scholar 

  21. Meador WE, Means AR, Quiocho FA: Modulation of calmodulin plasticity in molecular recognition on the basis of x-ray structures. Science 262: 1718–1721, 1993

    PubMed  Google Scholar 

  22. Zhang M, Vogel HJ: The calmodulin-binding domain of caldesmon binds to calmodulin in an α-helical conformation. Biochemistry 33: 1163–1171, 1994

    PubMed  Google Scholar 

  23. Erickson-Viitanen S, DeGrado WF: Recognition and characterization of calmodulin-binding sequences in peptides and proteins. Meth Enzymol 139: 455–478, 1987

    PubMed  Google Scholar 

  24. Zhang M, Vogel HJ: Characterization of the calmodulin binding domain of rat cerebellar nitric oxide synthase. J Biol chem 269: 981–985, 1994

    PubMed  Google Scholar 

  25. Munier H, Blanco FJ, Precheur B, Nieto JL, Craescu CT, Barzu O: Characterization of a synthetic calmodulin-binding peptide derived from Bacillus anthracis adenylate cyclase. J Biol Chem 268: 1695–1701, 1993

    PubMed  Google Scholar 

  26. Miller A, Mietzner TA, Cloyd MW, Robey WG, Montelaro RC: Identification of a calmodulin-binding and inhibitory peptide domain in the HIV-1 transmembrane glycoprotein. AIDS Res Hum Retrovir 9: 1051–1060, 1993

    PubMed  Google Scholar 

  27. Srinivas SK, Srinivas RV, Anantharamaiah GM, Compans RW, Segrest JP: Cytosolic domain of the HIV envelope glycoprotein binds to calmodulin and inhibits calmodulin regulated proteins. J Biol Chem 268: 22895, 1993

    PubMed  Google Scholar 

  28. Lukas TJ, Burgess WH, Prendergast FG, Lau W, Watterson DM: Calmodulin binding domains: characterization of a phosphorylation and calmodulin binding site from myosin light chain kinase. Biochemistry 25: 1458–1464, 1986

    PubMed  Google Scholar 

  29. Alexander KA, Wakim BT, Doyl GS, Walsh KA and Storm DR: Identification and characterization of the calmodulin-binding domain of neuromodulin, a neurospecific calmodulin-binding protein. J Biol Chem 263: 7544–7549, 1988

    PubMed  Google Scholar 

  30. Mills JS, Walsh MP, Nemcek K, Johnson JD: Biologically active derivatives of spinach calmodulin that report calmodulin target protein binding. Biochemistry 27: 991–996, 1988

    PubMed  Google Scholar 

  31. Kilhoffer MC, Roberts DM, Adibi A, Watterson DM, Haiech J: Fluorescence characterization of VU-9 calmodulin, an engineered calmodulin with one Trp in calcium binding domain III. Biochemistry 28: 6086–6092, 1988

    Google Scholar 

  32. Reid KSC, Lindley PF, Thornton JM: Sulphur-aromatic interactions in proteins. FEBS Lett 190: 209–213, 1985

    Google Scholar 

  33. Gellman S: The role of methionine residues in the sequence independent recognition of nonpolar protein surfaces. Biochemistry 30: 6633–6636, 1991

    PubMed  Google Scholar 

  34. Walsh MP, Stevens FC: Chemical modification studies on the calcium dependent protein modulator: The role of methionines in the activation of cyclic nucleotide phosphodiesterase. Biochemistry 17: 3924–3930, 1978

    PubMed  Google Scholar 

  35. Gopalakrishna R, Anderson WB: The effects of chemical modification of calmodulin on Ca2+-induced exposure of a hydrophobic region. Biochem Biophys Acta 844: 264–269, 1984

    Google Scholar 

  36. Klevitt RE, Levine BA, Williams RJP: A study of calmodulin and its interaction with trifluoperazine by 'H NMR spectroscopy. FEBS Lett 123: 25–29, 1983

    Google Scholar 

  37. Zhang M, Vogel HJ: Two-dimensional NMR studies of selenomethionine calmodulin. J Mol Biol 239: 545–554, 1994

    PubMed  Google Scholar 

  38. Zhang M, Li M, Wang J, Vogel HJ: The effect of Met→Leu mutations on calmodulin's ability to activate cyclic nucleotide phosphodiesterase. J Biol Chem 269: 15546–15552, 1994

    PubMed  Google Scholar 

  39. Heidorn DB, Trewhella J: Comparison of the crystal and solution structures of calmodulin and Troponin C: Biochemistry 27: 909–915, 1988

    PubMed  Google Scholar 

  40. Huque ME: NMR studies of calmodulin. PhD thesis, University of Calgary, 1989

  41. Huque ME, Vogel HJ: Carbon-13 NMR studies of the lysine side chains of calmodulin and its proteolytic fragments. J Prot Chem 12: 693–705, 1993

    Google Scholar 

  42. Zhang M, Vogel HJ: NMR studies of the pKa's of the lysine sidechains of calmodulin. J Biol Chem 268: 22420–22428, 1993

    PubMed  Google Scholar 

  43. Zhang M, Huque ME, Vogel HJ: Characterization of trimethyl-lysine-115 in calmodulin by nitrogen-14 and carbon-13 NMR. J Biol Chem 269: 5099–5105, 1994

    PubMed  Google Scholar 

  44. Burley SK, Petsko GA: Electrostatic interactions in aromatic oligopeptides contribute to protein stability. Tr Biotech 7: 354–359, 1989)

    Google Scholar 

  45. Zhang M, Yuan T, Aramini J, Vogel HJ: Multinuclear NMR studies of the interaction of calmodulin with its binding domain of constitutive nitric oxide synthase (submitted for publication)

  46. Jackson AE, Carraway KL, Puett D, Brew K: Effects of the binding of myosin light chain kinase on the reactivities of calmodulin lysines. J Biol Chem 261: 12226–12232, 1986

    PubMed  Google Scholar 

  47. Manalan AS, Klee CB: Affinity selection of chemically modified proteins: Role of Lysyl residues in the binding of calmodulin to calcineurin. J Biol Chem 262: 1382–1390, 1987

    PubMed  Google Scholar 

  48. Cox JA, Comte M, Fitton JE, DeGrado WF: The interaction of calmodulin with amphiphilic helices. J Biol Chem 260: 2527–2534, 1985

    PubMed  Google Scholar 

  49. Haris PI, Chapman D: Does Fourier Transform Infrared Spectroscopy provide useful information on protein structures? Tr Biochem Sc 17: 328–333, 1992

    Google Scholar 

  50. Surewicz WK, Mantsch HH, Chapman D: Determination of protein secondary structure by Fourier Transform Infrared Spectroscopy: A critical assessment. Biochemistry 32: 389–394, 1993

    PubMed  Google Scholar 

  51. Haris PI, Robillard GT, van Dijk AA, Chapman D. Potential of13C and15N labelling for protein-protein interactions using FTIR spectroscopy. Biochemistry 31: 6279–6284, 1992

    PubMed  Google Scholar 

  52. Zhang M, Fabian H, Mantsch HH, Vogel HJ: Isotope-edited FTIR spectroscopy studies of calmodulin's interaction with its target peptides. Biochemistry 33: 10883–10888

  53. Roth SM, Schneider DM, Strobel LA, Van Berkum MFA, Means AR, Wand AJ: Structure of the smooth muscle myosin light chain kinase calmodulin domain peptide bound to calmodulin. Biochemistry 30: 10078–10084, 1991

    PubMed  Google Scholar 

  54. Roth SM, Schneider DM, Strobel LA, VanBerkum MFA, Means AR, Wand J: Characterization of the secondary structure of calmodulin in complex with a calmodulin-binding domain peptide. Biochemistry 31: 1443–1451, 1992

    PubMed  Google Scholar 

  55. Ikura M, Bax A: Isotope filtered 2D NMR of a protein-peptide complex: Study of the myosin light chain kinase fragment bound to calmodulin. J Am Chem Soc 114: 2433–2440, 1992

    Google Scholar 

  56. Campbell AP, Sykes BD: The two dimensional transferred nuclear Overhauser effect: Theory and practice. Annu Rev Biophys Biomol Struct 22: 99–122, 1993

    PubMed  Google Scholar 

  57. Zhang M, Vogel HJ, Zwiers H: NMR studies of B50/neuromodulin and its interaction with calmodulin. Biochem Cell Biol 72: 109–116, 1994

    PubMed  Google Scholar 

  58. Zhang M, Yuan T, Vogel HJ: A peptide analog of the calmodulin binding domain of Myosin Light Chain Kinase adopts an α-helical structure in aqueous trifluoroethanol. Protein Sc 2: 1931–1937, 1993

    Google Scholar 

  59. Wüthrich K: NMR of proteins and nucleic acids. John Wiley & Sons, New York: 1–285, 1986

    Google Scholar 

  60. Wishart DS, Sykes BD, Richards FM: Relationship between NMR chemical shift and protein secondary structure. J Mol Biol 222: 311–333, 1986

    Google Scholar 

  61. Spera S, Bax A: Empirical correlation between protein backbone conformation and Cα and Cβ 13C NMR chemical shifts. J Am Chem Soc 113: 5490–5492, 1991

    Google Scholar 

  62. Zvelebil MJJH, Thronton JM: Peptide-protein interaction: An overview. Q Rev Biophys 26: 333–363, 1993

    PubMed  Google Scholar 

  63. Vogel HJ: Ligand binding sites on calmodulin. In: Calcium in drug actions (Ed PF Baker) Springer-Verlag, Berlin, 57–87, 1987

    Google Scholar 

  64. DasGupta M, Honeycutt T, Blumenthal DK: The γ subunit of muscle phosphorylase kinase contains two noncontiguous domains that act in concert to bind calmodulin. J Biol Chem 264: 17156–17163, 1989

    PubMed  Google Scholar 

  65. Lu KP, Means AR: Regulation of the cell cycle by calcium and calmodulin. Endocr Rev 14: 40–58, 1993

    PubMed  Google Scholar 

  66. Corneliussen B, Holm M, Waltersson Y, Onions J, Halberg B, Thornell A, Grundstrom T: Calcium-calmodulin inhibition of basic-helix-loophelix transcription factor domains. Nature 368: 760–764, 1994

    PubMed  Google Scholar 

  67. Siivari K, Zhang M, Palmer A, Vogel HJ: NMR studies of the Methionine methyl groups in calmodulin. FEBS Lett (in press)

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Vogel, H.J., Zhang, M. Protein engineering and NMR studies of calmodulin. Mol Cell Biochem 149, 3–15 (1995). https://doi.org/10.1007/BF01076558

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