Skip to main content
Log in

Amplification and dispersion of repeated DNA sequences in theTriticeae

  • Published:
Plant Systematics and Evolution Aims and scope Submit manuscript

Abstract

Four representatives of a family of dispersed repetitive sequences which were prominent and dispersed in the E genome ofThinopyrum elongatum but poorly represented in wheat, were studied in detail. The 1.4kb sequences were present both as part of tandem and more complex arrays and appeared to have resulted from repeated amplification of the sequence and their dispersion throughout the genome. Subcloning of sections of the 1.4 kb sequences resulted in probes which improved the resolution of the E genome from the genomes in wheat and enabled identification of single E genome chromosomes introduced into wheat. The generality of these types of sequences in the tribeTriticeae was confirmed by isolating analogous sequences from the R (rye,Secale cereale), V (Dasypyrum villosum), and N (Psathyrostachys juncea) genomes. — The cloned repetitive sequences from the R, V, and N genomes each showed characteristic fluctuations in amount within the grasses examined in addition to being virtually absent from wheat. It is thus possible that these sequences may provide useful taxonomic indicators for establishing relationships within theTriticeae, as well as valuable probes for tracing alien chromatin introduced into wheat.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Anderson, D. M., Scheller, R. H., Posakony, J. W., McAllister, L. B., Trabert, S. G., Beall, C., Britten, R. J., Davidson, E. H., 1981: Repetitive sequences of the sea urchin genome. — J. Mol. Biol.145: 4–28.

    Google Scholar 

  • Appels, R., Moran, L. B., 1984: Molecular analysis of alien chromatin introduced into wheat. — InGustafson, J. P., (Ed.): 16th Stadler Genetics Symposium, Missouri: pp. 529–557.

  • —,Dennis, E. S., Smyth, D. R., Peacock, W. J., 1981: Two repeated DNA sequences from the heterochromatic regions of rye (Secale cereale) chromosomes. — Chromosoma84: 265–277.

    Google Scholar 

  • —,Driscoll, C., Peacock, W. J., 1978: Heterochromatin and highly repeated DNA sequences in rye (Secale cereale). — Chromosoma70: 67–89.

    Google Scholar 

  • —,Moran, L. B., Gustafson, J. P., 1986: Rye heterochromatin. I. Studies on clusters of the major repeating sequence and the identification of a new dispersed repetitive sequence element. — Canad. J. Genet. Cyt.28: 645–673.

    Google Scholar 

  • Arnold, M. L., Appels, R., Shaw, D. D., 1985: The heterochromatin of grasshoppers from theCaledia captiva species complex. 1. Sequence evolution and conservation in a highly repeated DNA family. — Mol. Biol. Evol.3: 29–43.

    Google Scholar 

  • Baldari, C. S., Amaldi, F., 1976: DNA reassociation kinetics in relation to genome size in four amphibian species. — Chromosoma59: 13–22.

    Google Scholar 

  • Bedbrook, J. R., O'Dell, M., Flavell, R. B., 1980: Amplification of rearranged repeated DNA sequences in cereal plants. — Nature288: 133–137.

    Google Scholar 

  • Bennett, M. D., 1972: Nuclear DNA content and minimum generation time in herbaceous plants. — Proc. Roy. Soc. London, Ser. B,181: 109–135.

    Google Scholar 

  • Bouchard, R. A., 1982: Moderately repetitive DNA in evolution. — Intl. Rev. Cyt.76: 113–193.

    Google Scholar 

  • —,Stern, H., 1980: DNA synthesized at pachytene inLilium: a non-divergent subclass of moderately repetitive sequences. — Chromosoma81: 349–363.

    Google Scholar 

  • Bukhari, A. I., Shapiro, J. A., Adhya, S. L., 1977: — InBukhari, A. I., (Ed.): DNA insertion elements, plasmids and episomes. — Cold Spring Harbor, New York: Cold Spring Harbor Laboratory.

    Google Scholar 

  • Cameron, J. R., Loh, E. Y., Davis, R. W., 1979: Evidence for transposition of dispersed repetitive DNA families in yeast. — Cell16: 739–751.

    Google Scholar 

  • Chooi, W. Y., 1971: Comparison of the DNA of sixVicia species by the method of DNA-DNA hybridization. — Genetics68: 213–230.

    Google Scholar 

  • Deininger, P. L., Schmid, C. W., 1979: A study of the evolution of repeated DNA sequences in primates and the existence of a new class of repeated sequence in primates. — J. Mol. Biol.127: 437–460.

    Google Scholar 

  • Dennis, E. S., Peacock, W. J., 1984: Knob heterochromatin homology in maize. — J. Mol. Evol.20: 341–350.

    Google Scholar 

  • Dewey, D. R., 1982: Genomic and phylogenetic relationships among North American perennialTriticeae grasses. — InEster, J. R., Tyrl, R. J., Brunken, J. N., (Eds.): Grasses and grasslands: systematics and ecology, pp. 51–88. Norman, Oklahoma: Univ. of Oklahoma Press.

    Google Scholar 

  • —, 1984: The genomic system of classification as a guide to intergeneric hybridization with the perennialTriticeae. — InGustafson, J. P., (Ed.): Gene manipulation in plant improvement, pp. 209–280. — New York: Plenum Press.

    Google Scholar 

  • Dvorak, J., Appels, R., 1982: Chromosome and nucleotide sequence differentiation in genomes of polyploidTriticum species. — Theor. Appl. Genet.63: 349–360.

    Google Scholar 

  • Eden, F. C., Hendrick, J. P., Gottlieb, S. C., 1978: Homology of single copy and repeated sequences in chicken, duck, Japanese quail, and ostrich DNA. — Biochemistry17: 5113–5121.

    Google Scholar 

  • Federoff, N. V., 1984: Transposable genetic elements in maize. — Scientific American250 (6): 64–74.

    Google Scholar 

  • Fincham, J. R. S., Sastry, G. R. K., 1974: Controlling elements in maize. — Ann. Rev. Genetics8: 15–50.

    Google Scholar 

  • Flavell, R. B., 1980: The molecular characterization and organization of plant chromosomal DNA sequences. — Ann. Rev. Plant Physiol.31: 569–596.

    Google Scholar 

  • —,Smith, D. B., 1976: Nucleotide sequence organisation in the wheat genome. — Heredity37: 231–252.

    Google Scholar 

  • —,O'Dell, M., Hutchinson, J., 1980a: Nucleotide sequence organization in plant chromosomes and evidence for sequence translocations during evolution. — Cold Spring Harbor Symp. Quant. Biol.45: 501–508.

    Google Scholar 

  • —, —, 1979: Repeated sequence DNA comparisons betweenTriticum andAegilops species. — Heredity42: 309–322.

    Google Scholar 

  • —,Rimpau, J., Smith, D. B., 1977: Repeated sequence DNA relationships in four cereal genomes. — Chromosoma63: 205–222.

    Google Scholar 

  • -Bedbrook, J. R., Jones, J., O'Dell, M., Gerlach, W. L., Dyer, T. A., Thompson, R. D., 1980b: Molecular events in the evolution of cereal chromosomes. — InDavies, D. R., Hopwood, D. A., (Eds.): The 4th John Innes Symposium, pp. 15–30. — John Innes Charity.

  • Gerlach, W. L., Dyer, T. A., 1980: Sequence organisation of the repeating units in the nucleus of wheat which contain 5 S rRNA genes. — Nucleic Acids Res.8: 4851–4865.

    Google Scholar 

  • Hake, S., Walbot, V., 1980: The genome ofZea mays, its organiza ion and homology to related grasses. — Chromosoma79: 251–270.

    Google Scholar 

  • Harpold, M. M., Craig, S. P., 1977: The evolution of repetitive DNA sequences in sea urchins. — Nucleic Acids Res.4: 4425–4437.

    Google Scholar 

  • Holmquist, G. P., Dancis, B., 1979: Telomere replication, kinetochore organisers and satellite evolution. — Proc. Natl. Acad. Sci. U.S.A.76: 4566–4570.

    Google Scholar 

  • Houck, C. M., Rinehart, F. P., Schmid, C. W., 1978: Fractionation of renatured repetitive human DNA according to thermal stability, sequence length, and renaturation rate. — Biochim. Biophys. Acta518: 37–52.

    Google Scholar 

  • —, —, —, 1979: A ubiquitous family of repeated DNA sequences in the human genome. — J. Mol. Biol.132: 289–306.

    Google Scholar 

  • Hourcade, D., Dressler, D., Wolfson, J., 1973: The amplification of ribosomal RNA genes involving a rolling circle intermediate. — Proc. Natl. Acad. Sci. U.S.A.70: 2926–2930.

    Google Scholar 

  • Hutchinson, J., Narayan, R. K. J., Rees, H., 1980: Constraints upon the composition of supplementary DNA. — Chromosoma78: 137–145.

    Google Scholar 

  • Jan, C. C., de Pace, C., McGuire, P. E., Qualset, C. O., 1986: Hybrids and amphiploids ofTriticum aestivum L. andT. turgidum L. withDasypyrum villosum (L.)Candargy. — Z. Pflanzenzüchtung96: 97–106.

    Google Scholar 

  • Johnson, S. A., Davidson, E. H., Britten, R. J., 1984: Insertion of a short repetitive sequence (D 881) in a sea urchin gene: a typical interspersed repeat? — J. Mol. Evol.20: 195–201.

    Google Scholar 

  • Jones, J. D. G., Flavell, R. B., 1982: The structure, amount and chromosomal localisation of defined repeated DNA sequences in species of the genusSecale. — Chromosoma86: 613–641.

    Google Scholar 

  • Kafatos, F. C., Jones, C. W., Efstratiadis, A., 1979: Determination of nucleic acid sequence homologies and relative concentrations by a dot hybridisation procedure. — Nucleic Acids Res.7: 1541–1552.

    Google Scholar 

  • Klein, W. H., Thomas, T. L., Lai, C., Scheller, R. H., Britten, R. J., Davidson, E. H., 1978: Characteristics of individual repetitive sequence families in the sea urchin genomes studied with cloned repeats. — Cell14: 889–900.

    Google Scholar 

  • Knott, D. R., 1961: The inheritance of rust resistance. VI. The transfer of stem rust resistance fromAgropyron elongatum to common wheat. — Canad. J. Plant Sci.41: 109–123.

    Google Scholar 

  • —, 1964: The effect of anAgropyron chromosome carrying rust resistance. — Canad. J. Genet. Cytol.6: 500–507.

    Google Scholar 

  • —,Dvorak, J., Nanda, J. S., 1977: Transfer to wheat and homoeology of anAgropyron elongatum chromosome carrying resistance to stem rust. — Canad. J. Genet. Cytol.19: 75–79.

    Google Scholar 

  • Lawrence, T., 1967: Inheritance of a dwarf character in Russian wild ryegrass,Elymus junceus. — Canad. J. Genet. Cytol.9: 126–128.

    Google Scholar 

  • Lewin, B., 1974: Sequence organisation of eucaryotic DNA: Defining the unit of gene expression. — Cell1: 107–111.

    Google Scholar 

  • McGuire, P. E., Dvorak, J., 1981: High salt-tolerance potential in wheatgrasses. — Crop Sci.21: 702–705.

    Google Scholar 

  • McIntyre, C. L., 1988: Variation at isozyme loci inTriticeae. — Pl. Syst. Evol.160: 123–142.

    Google Scholar 

  • Miksche, J. P., Hotta, Y., 1973: DNA base composition and repetitious DNA in several conifers. — Chromosoma41: 29–36.

    Google Scholar 

  • Mizuno, S., McGregor, H. C., 1974: Chromosomes, DNA sequences and evolution in salamanders of the genusPlethedon. — Chromosoma48: 239–296.

    Google Scholar 

  • —,Andrews, C., MacGregor, H. C., 1976: Interspecific “common” repetitive DNA sequences in salamanders of the genusPlethedon. — Chromosoma58: 1–31.

    Google Scholar 

  • Moore, G. P., Scheller, R. H., Davidson, E. H., Britten, R. J., 1978: Evolutionary change in the repetition frequency of sea urchin DNA sequences. — Cell15: 649–660.

    Google Scholar 

  • Narayan, R. K. J., Rees, H., 1976: Nuclear DNA variation inLathyrus. — Chromosoma54: 141–154.

    Google Scholar 

  • —, —, 1977: Nuclear DNA divergence amongLathyrus species. — Chromosoma63: 101–107.

    Google Scholar 

  • Nevers, P., Shepherd, N. S., Saedler, H., 1986: Plant transposable elements. — Adv. Bot. Res.12: 103–203.

    Google Scholar 

  • Peacock, W. J., Dennis, E. S., Rhoades, M. M., Pryor, A. J., 1981: Repeated DNA limited to knob heterochromatin in maize. — Proc. Natl. Acad. Sci. U.S.A.78: 4490–4494.

    Google Scholar 

  • Posakony, J. W., Scheller, R. H., Anderson, D. M., Britten, R. J., Davidson, E. H., 1981: Repetitive sequences of the sea urchin genome. III. Nucleotide sequences of cloned repeat elements. — J. Mol. Biol.149: 41–67.

    Google Scholar 

  • Potter, S. S., Brorein, W. J., Dunsmuir, P., Rubin, G. M., 1979: Transposition of elements of the 412, copia and 297 dispersed repeated gene families inDrosophila. — Cell17: 415–427.

    Google Scholar 

  • Ranjekar, P. K., Pallotta, D., Lafontaine, J. G., 1978: Analysis of plant genomes. III. Denaturation and reassociation properties of cryptic satellite DNA's in barley (Hordeum vulgare) and wheat (Triticum aestivum). — Biochim. Biophys. Acta520: 103–110.

    Google Scholar 

  • Rayburn, A. L., Gill, B. S., 1986: Isolation of a D-genome specific repeated DNA sequence fromAegilops squarrosa. — Plant Mol. Biol. Rept.4: 102–109.

    Google Scholar 

  • Riley, R., Ewart, J. A. D., 1970: The effect of individual rye chromosomes on the amino acid content of wheat grains. — Genet. Res. Camb.15: 209–219.

    Google Scholar 

  • —,Macer, R. C. F., 1966: The chromosomal distribution of the genetic resistance of rye to wheat pathogens. — Canad. J. Genet. Cytol.8: 640–654.

    Google Scholar 

  • Rimpau, J., Smith, D. B., Flavell, R. B., 1978: Sequence organisation analysis of the wheat and rye genomes by interspecies DNA/DNA hybridization. — J. Mol. Biol.123: 327–359.

    Google Scholar 

  • —, —, —, 1980: Sequence organisation in barley and oats chromosomes revealed by interspecies DNA/DNA hybridization. — Heredity44: 131–149.

    Google Scholar 

  • Rubin, C. R., Houck, C. M., Deininger, P. L., Friedmann, T. F., Schmid, C. W., 1980: Partial nucleotide sequence of the 300-nucleotide interspersed repeated human DNA sequences. — Nature (London)284: 372–374.

    Google Scholar 

  • Sanger, F., Nicklen, S., Coulson, A. R., 1977: DNA sequencing with chain-terminating inhibitors. — Proc. Natl. Acad. Sci. U.S.A.74: 5463–5467.

    Google Scholar 

  • Scheller, R. H., Anderson, D. M., Posakony, J. W., McAllister, L. B., Britten, R. J., Davidson, E. H., 1981: Repetitive sequences of the sea urchin genome. II. Subfamily structure and evolutionary conservation. — J. Mol. Biol.149: 15–39.

    Google Scholar 

  • Shimsi, D., Mayoral, M. L., Atsoman, D., 1982: Response to water stress in wheat and related species. — Crop Sci.22: 123–128.

    Google Scholar 

  • Smith, D. B., Flavell, R. B., 1977: Nucleotide sequence organisation in the rye genome. — Biochim. Biophys. Acta474: 82–97.

    Google Scholar 

  • Smith, G. P., 1973: Unequal crossing over and the evolution of multigene families. — Cold Spring Harbor Symp. Quant. Biol.38: 507–514.

    Google Scholar 

  • —, 1976: Evolution of repeated DNA sequences by unequal crossover. — Science191: 528–535.

    Google Scholar 

  • Southern, E. M., 1970: Base sequence and evolution of guinea-pig α-satellite DNA. — Nature227: 794–798.

    Google Scholar 

  • Straus, N. A., 1972: Reassociation of bean DNA. — Carnegie Inst. Year Book71: 257–259.

    Google Scholar 

  • Strobel, E., Dunsmuir, P., Rubin, G. M., 1979: Polymorphisms in the chromosomal locations of elements of the 412, copia and 297 repeated gene families inDrosophila. — Cell17: 429–439.

    Google Scholar 

  • Tartof, K. D., 1973: Unequal mitotic sisterchromatid exchange and disproportionate replication as mechanisms regulating ribosomal RNA gene redundancy. — Cold Spring Harbor Symp. Quant. Biol.38: 491–500.

    Google Scholar 

  • Thompson, W. F., Murray, M. G., 1980: Sequence organisation in pea and mung bean DNA and a model for genome evolution. — InDavies, D. R., Hopwood, D. A., (Eds.): The 4th John Innes Symposium, pp. 31–40. — Norwich: John Innes Institute.

    Google Scholar 

  • Trick, M., Dover, G. A., 1984: Unexpectedly slow homogenisation within a repetitive DNA family shared between two subspecies of Tsetse fly. — J. Mol. Evol.20: 322–329.

    Google Scholar 

  • Walker, P. M. B., 1971: “Repetitive” DNA in higher organisms. — Progr. Biophys. Molec. Biol.23: 145–190.

    Google Scholar 

  • Wells, R. D., Buchi, H., Kossel, M., Outsuka, E., Khorana, H. G., 1967: Studies on polynucleotides LXX: Synthetic deoxyribopolynucleotides as templates for the DNA polymerase ofE. coli: DNA-like polymers containing repeated tetranucleotide sequences. — J. Mol. Biol.27: 265–272.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

McIntyre, C.L., Clarke, B.C. & Appels, R. Amplification and dispersion of repeated DNA sequences in theTriticeae . Pl Syst Evol 160, 39–59 (1988). https://doi.org/10.1007/BF00936708

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00936708

Key words

Navigation