Skip to main content
Log in

Transcript identification in the BRCA1 candidate region

  • Molecular Genetics in Breast Cancer — minisymposium
  • Published:
Breast Cancer Research and Treatment Aims and scope Submit manuscript

Summary

Chromosome 17q12-21 is known to contain a gene (or genes) which confers susceptibility to early-onset breast cancer and ovarian cancer (BRCA1). Identification and isolation of BRCA1 will likely provide the basis for increased understanding of the pathogenesis of breast and ovarian cancer, the development of targeted diagnostic and therapeutic approaches, and a means of screening women at risk of being BRCA1 mutation carriers. Genetic and physical maps of the BRCA1 candidate region have been largely completed and efforts are being directed at identification of candidate genes from within this region. We have begun the task of identifying transcripts from this region employing three complementary strategies. These include: 1) direct cDNA screening with cosmids derived from the BRCA1 region; 2) exon amplification; and 3) magnetic bead capture. Transcripts identified using these approaches are being characterized for: 1) tissue expression pattern; 2) the presence of genomic rearrangement in DNA derived from affected members of families believed to show linkage between breast cancer and genetic markers in the BRCA1 candidate interval; 3) altered size and/or expression pattern in RNA prepared from such individuals; and 4) homology to known genes or functional motifs. Germline mutations in affected individuals from these families will serve as presumptive evidence of BRCA1 identity.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Hall JM, Lee MK, Newman B, Morrow JE, Anderson LA, Huey B, King M-C: Linkage of early onset breast cancer to chromosome 17q21. Science 250:1684–1689, 1990.

    Google Scholar 

  2. Narod SA, Feuteun J, Lynch HT, Watson P, Conway T, Lynch J, Lenoir GM: Familial breast-ovarian cancer locus on chromosome 17q12-23. Lancet 338: 82–83, 1991.

    Google Scholar 

  3. Easton DF, Bishop DT, Ford D, Crockford GP, and the Breast Cancer Linkage Consortium: Genetic linkage analysis in familial breast and ovarian cancer — results from 214 families. Am J Hum Genet 52:678–701, 1993.

    Google Scholar 

  4. Claus EB, Risch N, Thompson WD: Genetic analysis of breast cancer in the cancer and steroid hormone study. Am J Hum Genet 48:232–242, 1991.

    Google Scholar 

  5. Colditz GA, Willett WC, Hunter DJ, Stampfer MJ, Manson JE, Hennekens CH, Rosner BA: Family history, age and risk of breast cancer. JAMA 270: 338–343, 1993.

    Google Scholar 

  6. Slattery ML, Kerber RA: A comprehensive evaluation of family history and breast cancer risk: the Utah Population Database. JAMA 270:1563–1568, 1993.

    Google Scholar 

  7. Weber BL, Garber JE: Family history and breast cancer: probabilities and possibilities. JAMA 270: 1602–1603, 1993.

    Google Scholar 

  8. Knudson AG: Mutation and cancer: statistical study of retinoblastoma. Proc Natl Acad Sci USA 68:820–823, 1971.

    Google Scholar 

  9. Smith SA, Easton DF, Evans DGR, Ponder BAJ: Allele losses in the region 17q12-21 in familial breast and ovarian cancer involve the wild-type chromosome. Nature Genetics 2:128–131, 1991.

    Google Scholar 

  10. Chamberlain JS, Boehnke M, Frank TS, Kiousis S, Xu J, Guo S-W, Hauser ER, Norum RA, Helmbold EA, Markel DS, Keshavarzi SM, Jackson CE, Calzone K, Garber J, Collins FS, Weber BL: BRCA1 maps proximal to D17S579 on chromosome 17q21 by genetic analysis. Am J Hum Genet 52:792–798, 1993.

    Google Scholar 

  11. Fearon ER, Cho KR, Nigro JM, Kern SE, Simons JW, Ruppert JM, Hamilton SR, Preisinger AC, Thomas G, Kinzler KW: Identification of a chromosome 18q gene that is altered in colorectal cancers. Science 247:49–56, 1990.

    Google Scholar 

  12. Lee WH, Bookstein R, Hong F, Young LJ, Shew JY, Lee EY: Human retinoblastoma susceptibility gene: cloning, identification and sequence. Science 235: 1394–1399, 1987.

    Google Scholar 

  13. Collins FS: Positional cloning: Let's not call it reverse any more. Nature Genetics 1:3–6, 1992.

    Google Scholar 

  14. Rommens JM, Iannuzzi MC, Kerem B, Drumm ML, Melmer G, Dean M, Rozmahel R, Cole JL, Kennedy D, Hidaka N: Identification of the cystic fibrosis gene: Chromosome walking and jumping. Science 245: 1059–1065, 1989.

    Google Scholar 

  15. Wallace MR, Marchuk DA, Andersen LB, Letcher R, Odeh HM, Saulino AM, Fountain JW, Brereton A, Nicholson J, Mitchell AL: Type I neurofibromatosis gene: Identification of a large transcript disrupted in three NFI patients. Science 249:181–186, 1990.

    Google Scholar 

  16. The Huntington's Disease Collaborative Research Group: A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's Disease chromosome. Cell 72:971–983, 1993.

    Google Scholar 

  17. Kinzler KW, Nilbert MC, Su L-K, Vogelstein B, Bryan TM, Levy DB, Smith KJ, Preisinger AC, Hedge P, McKechnie D: Identification of FAP locus genes from chromosome 5q21. Science 253:661–665, 1991.

    Google Scholar 

  18. Abel KJ, Boehnke M, Prahalad M, Ho P, Flejter WL, Watkins M, VanderStoep J, Chandrasekharappa SC, Collins FS, Glover TW, Weber BL: A radiation hybrid map of the BRCA1 region of chromosome 17q12-21. Genomics 17:632–641, 1993.

    Google Scholar 

  19. Flejter WL, Barcroft CL, Guo S-W, Lynch ED, Boehnke M, Chandrasekharappa SC, Hayes S, Collins FS, Weber BL, Glover TW: Multi-color FISH mapping with Alu-PCR amplified YAC clone DNA determines the order of markers in the BRCA1 region on chromosome 17q12-12. Genomics 17:624–631, 1993.

    Google Scholar 

  20. Anderson LA, Friedman L, Osborne-Lawrence S, Lynch E, Weissenbach J, Bowcock A, King M-C: Highdensity genetic map of the BRCA1 region of chromosome 17q12-21. Genomics 17:618–623, 1993.

    Google Scholar 

  21. Bowcock AM, Anderson LA, Black DM, Lawrence SO, Hall JM, King M-C: Polymorphisms in THRA1 and D17S183 flank less than 4 cM interval for the breast-ovarian cancer gene on chromosome 17q. Am J Hum Genet (in Press).

  22. Simard J, Feuteun J, Lenoir G, Tonin P, Normand T, Luu The V, Vivier A, Lasko D, Morgan K, Rouleau GA, Lynch H, Labrie F, Narod SA: Genetic mapping of the breast-ovarian cancer syndrome to a small interval on chromosome 17q12-21: exclusion of candidate genes EDH17B2 and RARA. Human Molecular Genetics 2:1193–1199, 1993.

    Google Scholar 

  23. Buckler AJ, Chang DD, Graw SL, Brook JD, Haber DA, Sharp PA, Housman DE: Exon amplification: A strategy to isolate mammalian genes based on RNA splicing. Proc Natl Acad Sci USA 88:4005–4009, 1991.

    Google Scholar 

  24. Lovett M, Kere J, Hinton LM: Direct selection: A method for the isolation of cDNAs encoded by large genomic regions. Proc Natl Acad Sci USA 88:9628–9632, 1991.

    Google Scholar 

  25. Tagle DA, Swaroop M, Lovett M, Collins FS: Magnetic bead capture of expressed sequences within large genomic segments. Nature 161:751–756, 1993.

    Google Scholar 

  26. Buckler AJ, Statler CJ, Rutter JL, Murrell J, Trofatter JA, McCormick MK, Deaven L, Mayzis RK, Gusella JF: Chromosome specific libraries of exons and high resolution transcription maps [abstract]. Am J Hum Genet 53:A192.

  27. North MA, Sanseau P, Bucker AJ, Church D, Jackson A, Patel K, Trowsdale J, Lehrach H: Efficiency and specificity of gene isolation by exon amplification. Mammalian Genome 4:466–474, 1993.

    Google Scholar 

  28. Krizman DB, Berget SM: 3'-terminal exon trapping: Identification of genes from vertebrate DNA. Focus 15:106–108, 1993.

    Google Scholar 

  29. Cotton RG, Rodrigues NR, Campbell RD: Reactivity of cytosine and thymine in single base pair mismatches with hydroxylamine and osmium tetraoxide and its application to the study of mutations. Proc Natl Acad Sci USA 85:4397–4401, 1988.

    Google Scholar 

  30. Orita M, Suziki Y, Sekiya T, Hayashi K: Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics 5:874–879, 1989.

    Google Scholar 

  31. Kinzler KW, Nilbert MC, Vogelstein B, Bryan TM, Levy DB, Smith KJ, Preisinger AC, Hamilton SR, Hedge P, Markham A, Carlson M, Joslyn G, Groden J, White R, Miki Y, Miyoshi Y, Nishisho I, Nakamura Y: Identification of a gene located at chromosome 5q21 that is mutated in colorectal cancers. Science 251:1366–1370, 1991.

    Google Scholar 

  32. Sato T, Saito H, Swensen J, Olifant A, Wood C, Danner D, Sakamoto T, Takita K, Kasumi F, Miki Y, Skolnik M, Nakamura Y: The human prohibitin gene located on chromosome 17q21 is mutated in sporadic breast cancer. Cancer Res 52:1643–1646, 1992.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Weber, B.L., Abel, K.J., Couch, F.J. et al. Transcript identification in the BRCA1 candidate region. Breast Cancer Res Tr 33, 115–124 (1995). https://doi.org/10.1007/BF00682719

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00682719

Key words

Navigation