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Phylogenetic position of the Chromista plastids based on small subunit rRNA coding regions

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Abstract

The kingdom Chromista contains eukaryotic organisms with tubular mastigonemes on the leading flagellum of their bi-flagellated stages, and plastids within a chloroplast endoplasmic reticulum (CER). The complex series of events leading to the formation of the CER is hypothesized to have occurred only once. Thus, all organisms with plastid-CER connections are believed to be monophyletic and derived from a single secondary endosymbiotic event. Analyses of sequence data from the 16s rRNA gene from three of the four Chromista pigmented classes indicate that these algae are not monophyletic. The validity of the kingdom Chromista and the number of secondary plastid endosymbioses are questioned.

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References

  • Barker GLA, Green JC, Hayes PK, Medlin LK (1994) Preliminary results using the RAPD analysis to screen bloom populations of Emiliania huxleyi (Haptophyta). Sarsia 79:301–306

    Google Scholar 

  • Bhattacharya D, Medlin L (1995) The phylogeny of plastids: a review based on comparison of small subunit ribosomal RNA coding regions. J Phycol 31:487–496

    Google Scholar 

  • Bhattacharya D, Medlin L, Wainwright PO, Ariztia EV, Bibeau C, Stickel SK, Sogin ML (1992) Algae containing chlorophylls a+c are polyphyletic: molecular evolutionary analysis of the Chromophyta. Evolution 46:1808–1817

    Google Scholar 

  • Cavalier-Smith T (1981) Eukaryote kingdoms: seven or nine? Biosystems 14:461–481

    Google Scholar 

  • Cavalier-Smith T (1982) The origins of plastids. Biol J Linn Soc 17:289–306

    Google Scholar 

  • Cavalier-Smith T (1986) The kingdom Chromista: origin and systematics. In: Round FE, Chapman DJ (eds) Progress in phycological research, vol 4. Biopres Ltd., Bristol, pp 319–358

    Google Scholar 

  • Cavalier-Smith T (1993) The kingdom Protozoa and its 18 phyla. Microbiol Rev 57:953–994

    Google Scholar 

  • Cavalier-Smith T, Allsopp MTEP, Chao EE (1994) Chimeric conundra: are nucleomorphs and chromists monophyletic or polyphyletic? Proc Natl Acad Sci USA 91:11368–11372

    Google Scholar 

  • Douglas SE, Turner S (1991) Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor. J Mol Evol 33:267–273

    Google Scholar 

  • Douglas SE, Murphy CA, Spencer DF, Gray MW (1991) Cryptomonad algae are evolutionary chimeras of two phylogenetically distinct unicellular eukaryotes. Nature 350:148–151

    Google Scholar 

  • Doyle JJ, Doyle JL (1990) Isolation of plant DNA Focus 12:13–15

    Google Scholar 

  • Engel H, Boggasch E, Huss VAR (1993) The unusual size of the plastome of some prymnesiophytes: new aspects in plastid evolution (abstract). The Biology of the Prymnesiophyta, Plymouth, UK

    Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Google Scholar 

  • Felsenstein J (1993) PHYLIP manual, Version 3.5 Department of Genetics, University of Washington, Seattle

    Google Scholar 

  • Fitch WM, Margoliash E (1967) Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability Science 155:279–284

    Google Scholar 

  • Fujiwara S, Sawada MH, Someya J, Minaka N, Nishikawa S (1994) Molecular phylogenetic analysis of the rbcL in Prymnesiophyta. J Phycol 30:863–871

    Google Scholar 

  • Gibbs S (1962) Nuclear-envelope-chloroplast relationships in algae. J Cell Biol 14:433–444

    Google Scholar 

  • Gibbs S (1981) The chloroplasts of some algal groups may have evolved from endosymbiotic eukaryotic algae. Ann NY Acad Sci 361:193–207

    Google Scholar 

  • Gibbs S (1993) The evolution of algal chloroplasts. In: Lewin RA (ed) Origins of plastids. Chapman and Hall, New York, pp 107–121

    Google Scholar 

  • Giovannoni SJ, Turner S Olsen GJ, Barns S, Lane DJ, Pace NJ (1988) Evolutionary relationships among the cyanobacteria and green chloroplasts. J Bacteriol 170:3584–3592

    Google Scholar 

  • Giovannoni SJ, Wood N, Huss VAR (1993) Molecular phylogeny of oxygenic cells and organelles based on small-subunit ribosomal RNA sequences. In: Lewin RA (ed) Origins of plastids. Chapman and Hall, New York, pp 159–170

    Google Scholar 

  • Gutell RR (1993) Collection of small subunit (16s and 16s-like) ribosomal RNA structures. Nucleic Acids Res 21:3051–3054

    Google Scholar 

  • Helmchen T, Bhattacharya D, Melkonian M, (1995) Analyses of ribosomal RNA sequences from glaucocystophyte cyanelles provide new insights into the evolutionary relationships of plastids. J Mol Evol 41:203–210

    Google Scholar 

  • Hillis DM, Huelsenbeck JP, Cunningham CW (1994) Application and accuracy of molecular phylogenies. Science 264:671–677

    Google Scholar 

  • Kimura M (1980) A simple method for estimating evolutionary rates of base substitution through comparative studies of sequence evolution. J Mol Evol 16:111–120

    Google Scholar 

  • Larsen L, Olsen GJ, Maidak BL, McCaughey MJ, Overbeek R, Macke R, Marsh TL, Woese CR (1993) The ribosomal database project. Nucleic Acids Res 21 (suppl) 3021–3023

    Google Scholar 

  • Laval-Peuto M (1992) Plastidic Protozoa. In: Reisser N (ed) Algae and symbioses. Biopress Ltd., Bristol, pp 471–499

    Google Scholar 

  • Lockhart PJ, Howe CJ, Bryant DA, Beanland MD, Penny D (1994) Substitutional bias confounds inference of cyanelle origins from sequence data J Mol Evol 34:153–162

    Google Scholar 

  • Maddison WP, Maddison DR (1992) MacClade. Analysis of phylogeny and character evolution. Version 3. Sinauer Associates, Sunderland

    Google Scholar 

  • Markowicz Y, Loiseaux-de Goër S (1991) Plastid genomes of the Rhodophyta and the Chromophyta constitute a distinct lineage which differs from that of the Chlorophyta and have a composite phylogenetic origin, perhaps like that of the Euglenophyta. Curr Genet 20:427–430

    Google Scholar 

  • Martin W, Sommerville CC, Loiseaux-de Goër S (1992) Molecular phylogenies of plastid origins and algal evolution. J Mol Evol 35:385–404

    Google Scholar 

  • Medlin LK, Crawford RM, Andersen RA (1986) Histochemical and ultrastructural evidence for the function of the labiate process in the movement of centric diatoms. Br phycol J 21:297–301

    Google Scholar 

  • Medlin L, Elwood HJ, Stickel S, Sogin MI (1988) The characterization of enzymatically amplified eukaryotic 16s-like rRNA-coding regions. Gene 71:491–499

    Google Scholar 

  • Morden CW, Delwiche CF, Kuhsel M, Palmer JD (1992) Gene phylogenies and the endosymbiotic origin of plastids. BioSystems 28:75–90

    Google Scholar 

  • Neefs J-M, van de Peer Y, Derijk P, Goris A, Dewachter R (1991) Compilation of small ribosomal subunit RNA sequences. Nucleic Acid Res 19 (suppl): 1987–2015

    Google Scholar 

  • Ragan MA, Bird CJ, Rice EL, Gutell RR, Murphy CA Singh RK (1994) A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene. Proc Natl Acad Sci USA 91:7276–7280

    Google Scholar 

  • Saiki R, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487–491

    Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    Google Scholar 

  • Sanger F, Nicklen S, Coulsen AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    Google Scholar 

  • Saunders GW, Potter D, Paskind MP, Andersen RA (1995) Cladistic analyses of combined traditional and molecular data sets reveal a new algal lineage. Proc Natl Acad Sci USA 38:244–248

    Google Scholar 

  • Schnepf E (1993) From prey via endosymbiont to plastid comparative studies in dinoflagellates. In: Lewin RA (ed) Origins of plastids. Chapman and Hall, New York, pp 53–76

    Google Scholar 

  • Swofford DL (1993) PAUP: Phylogenetic analysis using parsimony, V3.1 Natural History Survey, Champaign

    Google Scholar 

  • Whatley JM (1993a) Chloroplast ultrastructure In: Berner T (ed) Ultrastructure of microalgae. CRC Press, Boca Raton, Florida, pp 135–204

    Google Scholar 

  • Whatley JM (1993b) Membranes and plastid origins. In: Lewin RA (ed) Origins of plastids. Chapman and Hall, New York, pp 77–106

    Google Scholar 

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Communicated by M.V. Ciriacy

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Medlin, L.K., Cooper, A., Hill, C. et al. Phylogenetic position of the Chromista plastids based on small subunit rRNA coding regions. Curr Genet 28, 560–565 (1995). https://doi.org/10.1007/BF00518169

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  • DOI: https://doi.org/10.1007/BF00518169

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