Summary
In situ hybridisation detection of mRNAs using riboprobes has become a widely used technique. However, the identification of cells producing closely-related yet distinct mRNAs is difficult with the usual size probes. More-over, it is not always easy to obtain the required cDNA essential for cRNA probe synthesis. To avoid these problems, we have used synthetic oligodeoxynucleotides to generate short, single stranded RNA probes (“oligo-riboprobes”). These probes can be labelled to very high (109 cpm/μg) specific activity and can be prepared for any published nucleotide sequence. We have used these probes to localise β (preprotachykinin) PPT mRNA producing neurons in rat hypothalamus and bowel. The results were compared to that obtained with cRNA probes generated from β preprotachykinin cDNA.
Similar content being viewed by others
References
Akam ME, Carlson JR (1985) The detection of Jonah gene transcripts in Drosophila by in situ hybridisation. EMBO J 4:155–161
Cox KH, DeLeon DV, Angerer LM, Angerer RC (1984) Detection of mRNAs in sea urchin embryos by in situ hybridisation using asymmetric RNA probes. Dev Biol 101:485–502
Krause JE, Chirgwin JM, Carter MS, Xu XS, Hershey AD (1987) Three preprotachykinin mRNAs encode the neuropeptides substance P and neurokinin A. Proc Natl Acad Sci USA 84:881–885
Krause JE, Cremins JD, Carter MS, Brown ER, McDonald MR (1988) Solution hybridisation-nuclease protection assays for the sensitive detection differentially spliced substance P- and neurokinin A-encoding mRNAs. Methods Enzymol (in press)
Leff SE, Rosenfeld MG, Evans RM (1986) Complex transcriptional units: diversity in gene expression by alternative RNA processing. Annu Rev Biochem 55:1091–1117
Lis JT (1980) Fractionation of DNA fragments by polyethylene glycol induced precipitation. In: Grossman L, Moldave K (eds) Methods in enzymology, vol 65. Academic Press, London, pp 347–353
Maxam AW, Gilbert W (1980) Sequencing end-labelled DNA with base-specific chemical cleavages. In: Grossman L, Moldave K (eds) Methods in enzymology, vol 65. Academic Press, London pp 499–560
Pardue ML (1985) In situ hybridisation. In: Hames BD, Higgins SJ (eds) Nucleic acid hybridisation; a practical approach. IRL Press, Oxford, pp 179–202
Penschow JD, Haralambidis J, Aldred P, Tregear GW, Coghlan JP (1986) Location of gene expression in CNS using hybridisation histochemistry. In: Conn PM (ed) Methods in enzymology, vol 124. Academic Press, London, pp 534–548
Wolfl S, Quaas R, Hahn U, Wittig B (1987) Synthesis of highly radioactively labelled RNA hybridisation probes from synthetic single-stranded DNA oligonucleotides. Nucl Acids Res 15:858
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Denny, P., Hamid, Q., Krause, J.E. et al. Oligo-riboprobes. Histochemistry 89, 481–483 (1988). https://doi.org/10.1007/BF00492605
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/BF00492605