Abstract
The physical, chemical, and functional heterogeneity of tranforming DNA was studied by preparative fractionation techniques providing resolution with respect to differences in molecular weight (gel filtration, sucrose density gradient), base composition (CsCl density gradient), or both these parameters simultaneously (methylalbumin-coated celite 545 MAK column). A comparison of the basic characteristics of the obtained fractions (melting temperature, T m; density, ρ; sedimentation coefficient, S 20,w; and transforming activity for ade, leu, and met markers) showed that the factor decisive for functional activity represents, in addition to the sequential arrangement of nucleotides in the chain, the average base composition. Hence, using the methylalbumin column or CsCl density gradient centrifugation, DNA fractions can be isolated which show a several times higher transforming activity for any of the markers examined. By contrast, the remaining fractionation methods, even though considerably decreasing the heterogeneity of the fractions as regards their molecular weight (such as zonal centrifugation), do not offer a possibility of fractionation of the activity for individual markers. This indicates a statistically random degradation of transforming DNA during its isolation. The order of the investigated markers according to their guanine-cytosine content is ade leu met and corresponds also to the order of their positions on the genetic map of Bacillus subtilis.
Similar content being viewed by others
References
Anagnastopoulos, C., and Spizizen, J. (1961). Requirements for transformation in Bacillus subtilis. J. Bacteriol. 81741.
Boublík, M., Pivec, L., Šponar, J., and Šormová, Z. (1965). DNAs in solutions. V. Heat denaturation of fractions and subunit structure of calf thymus DNA. Collection Czech. Chem. Commun. 302645.
Burton, K. (1956). A study of the conditions and mechanism of the diphenylamine reaction for the colorimetric estimation of deoxyribonucleic acid. Biochem. J. 62315.
Eigner, J., and Doty, P. (1965). The native, denatured and renatured states of deoxyribonucleic acid. J. Mol. Biol. 12549.
Goodman, H. M., Abelson, J. N., Landy, A., Zadražil, S., and Smith, J. D. (1970). The nucleotide sequences of tyrosine transfer RNAs of Escherichia coli. Europ. J. Biochem. 13461.
Guild, W. R. (1963). Evidence for intramolecular heterogeneity in pneumococcal DNA. J. Mol. Biol. 6214.
Iverson, R. M., and Giese, A. C. (1957). Synthesis of nucleic acids in ultraviolet-treated Escherichia coli. Biochim. Biophys. Acta 2562.
Lowry, O. H., Rosebrough, N. J., Farr, A. L., and Randall, R. J. (1951). Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193265.
Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol. 3208.
Marmur, J., and Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. Mol. Biol. 5109.
Meselson, M., Stahl, F. W., and Vinograd, J. (1957). Equilibrium sedimentation of macromolecules in density gradients. Proc. Natl. Acad. Sci. 43581.
Mindich, L., and Hotchkiss, R. D. (1964). The fractionation of pneumococcal genetic transforming activity. Biochim. Biophys. Acta. 8073.
O'Sullivan, A., Yoshikawa, H., and Sueoka, N. (1965). Relation between density of deoxyribonucleic acid and location on the map of genetic markers in Bacillus subtilis. Bacteriol. Proc. 6513.
Pivec, L., Šrogl, M., Zadražil, S., Fučík, V., and Šormová, Z. (1965). Physical and biological properties of fractionated DNA from Bacillus subtilis. In Kohoutová, M., and Hubáček, V. (eds.), The physiology of Gene and Mutation Expression, Academia, Prague, p. 205.
Pivec, L., Pivcová, H., and Šormová, Z. (1970). Plurimodal heterogeneity of base composition of DNA isolated from Bacillus subtilis. Biochim. Biophys. Acta 213343.
Rolfe, R. (1963). Changes in the physical state of DNA during the replication cycle. Proc. Natl. Acad. Sci. 49386.
Saito, H., and Masamune, Y. (1964). Fractionation of transforming DNA of Bacillus subtilis with the methylated albumin column. Biochim. Biophys. Acta 91344.
Schildkraut, C. L., Marmur, J., and Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its buoyant density in CsCl. J. Mol. Biol. 4430.
Smith, I., Dubnau, D., Morrell, P., and Marmur, J. (1968). Chromosomal location of DNA base sequences complementary to transfer RNA and to 5S, 16S, and 23S ribosomal RNA in Bacillus subtilis. J. Mol. Biol. 33123.
Spizizen, J. (1958). Transformation of a biochemically deficient strain of Bacillus subtilis by deoxyribonucleate. Proc. Natl. Acad. Sci. 441072.
Šponar, J., Pivec, L., and Šormová, Z. (1964). Deoxyribonucleic acids in solution. IV. Subunits in deoxyribonucleic acid from calf thymus. Collection Czech. Chem. Commun. 292077.
Šponar, J., Zadražil, S., Šormová, Z., and Šorm, F. (1965). Differences in the subunit structure of DNA from normal and leukemic mouse tissue. Collection Czech. Chem. Commun. 302253.
Šrogl, M. (1964). Thesis, Institute of Microbiology, Czechoslovak Academy of Sciences, Prague.
Stewart, C. R. (1969). Physical heterogeneity among Bacillus subtilis DNA molecules carrying particular genetic markers. J. Bacteriol. 981239.
Sueoka, N. (1961). Variation and heterogeneity of base composition of deoxyribonucleic acids: A compilation of old and new data. J. Mol. Biol. 331.
Sueoka, N. (1962). On the genetic basis of variation and heterogeneity of DNA base composition. Proc. Natl. Acad. Sci. 48582.
Takahashi, H., and Ikeda, Y. (1970). The intramolecular heterogeneity of Bacillus subtilis DNA studied by isopycnic CsCl gradient. Biochim. Biophys. Acta 213523.
Yoshikawa, H., and Sueoka, N. (1963). Sequential replication of Bacillus subtilis chromosome. I. Comparison of marker frequencies in exponential and stationary growth phase. Proc. Natl. Acad. Sci. 49559.
Yoshikawa, H., O'Sullivan, A., and Sueoka, N. (1964). Sequential replication of the Bacillus subtilis chromosome. III. Regulation of initiation. Proc. Natl. Acad. Sci. 52973.
Zadražil, S., and Mach, O. (1971). Isolation and fractionation of Bacillus subtilis transforming DNA. In Reid, E. (ed.), Separations with Zonal Rotors, Wolfson Bioanalytical Centre, University of Surrey, Guildford, p. 91.
Zadražil, S., and Šormová Z. (1966). Characterization of ribonucleic acid preparations from various sources with respect to their content of residual protein. Collection Czech. Chem. Commun. 311131.
Zadražil, S., Pivec, L., Šponar, J., Fučik, V., Šrogl, M., and Šormová, Z. (1965). Isolation and fractionation of DNA from different sources and their possible subunit structure. In Proceedings of Symposium on the methods of Estimation, Isolation, and Fractionation of Nucleic Acids, Varna, p. 48.
Zadražil, S., Fučík, V., and Šormová, Z. (1972). Unpublished results.
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Zadražil, S., Fučík, V. & Šormová, Z. Fractionation of DNA from Bacillus subtilis and its transforming activity for various markers. Biochem Genet 7, 57–71 (1972). https://doi.org/10.1007/BF00487010
Received:
Revised:
Issue Date:
DOI: https://doi.org/10.1007/BF00487010