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Pulsed field gel electrophoretic analysis of the rat major histocompatibility complex class III region shows extensive inter-species conservation

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Abstract

Using pulsed field gel electrophoresis (PFGE), we have examined the rat major histocompatibility complex (MHC) for the presence of a number of new class III region genes recently identified in the human MHC. We find homologous genes to the human G1, G2, G4, G7a, G9, G9a, G10, G13, G15, and G18 genes, but not the G8 gene in the rat genome, and show that these are linked to the rat TNF-α and C4/Slp loci. A long-range restriction map has been constructed on the basis of a PFGE analysis which demonstrates extensive co-linearity in the positions of the homologous sequences in the region between the C4/Slp and TNF loci in the rat MHC when compared with that of the human MHC class III region.

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References

  • Cameron, P.U., Tabarias, H.A., Pulendran, B., Robinson, W., Dawkins, R.L. (1990). Conservation of the central MHC genome: PFGE mapping and RFLP analysis of complement, HSP70, and TNF genes in the goat. Immunogenetics 31, 253–264.

    Article  PubMed  Google Scholar 

  • Carroll, M.C., Katzman, P., Alicot, E.M., Koller, B.H., Geraghty, D.E., Orr, H.T., Strominger, J.L., Spies, T. (1987). Linkage map of the human major histocompatibility complex including the tumor necrosis factor genes. Proc. Natl. Acad. Sci. USA 84, 8535–8539.

    PubMed  Google Scholar 

  • Carter, C.A., Fabre, J.W. (1991). The PVG-RT1r1 rat carries the HLA-DP like alpha and beta gene of the DA strain. Immunogenetics 33, 202–205.

    PubMed  Google Scholar 

  • Deverson, E.V., Gow, I.R., Coadwell, W.J., Monaco, J.J., Butcher, G.W., Howard, J.C. (1990). MHC class II region encoding proteins related to the multidrug resistance family of transmembrane transporters. Nature 348, 738–741.

    Article  PubMed  Google Scholar 

  • Diamond, A.G., Hood, L.E., Howard, J.C., Windle, M., Winoto, A. (1989). The class II genes of the rat MHC. J. Immunol. 142, 3268–3274.

    PubMed  Google Scholar 

  • Dunham, I., Sargent, C.A., Trowsdale, J., Campbell, R.D. (1987). Molecular mapping of the human major histocompatibility complex by pulsed-field gel electrophoresis. Proc. Natl. Acad. Sci. USA 84, 7237–7241.

    PubMed  Google Scholar 

  • Feinberg, A.P., Vogelstein, B. (1983). A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132, 6–13.

    PubMed  Google Scholar 

  • Fransen, L., Muller, R., Marmenout, A., Tavernier, J., Van der Heyden, J., Kawashima, E., Chollet, A., Tizard, R., Van Heuverswyn, H., Van Vliet, A., Ruuysschaert, M-R., Fiers, W. (1985). Molecular cloning of mouse tumour necrosis factor cDNA and its eukaryotic expression. Nucleic Acids Res. 13, 4417–4429.

    PubMed  Google Scholar 

  • Gaskins, H.R., Prochazka, M., Nadeau, J.H., Henson, V.W., Leiter, E.H. (1990). Localization of a mouse heat shock Hsp70 gene within the H-2 complex. Immunogenetics 32, 286–289.

    Article  PubMed  Google Scholar 

  • Hanson, I.M., Trowsdale, J. (1991). Colinearity of novel genes in the class II regions of the MHC in mouse and human. Immunogenetics 34, 5–11.

    Article  PubMed  Google Scholar 

  • Hsieh, S.L., Campbell, R.D. (1991). Evidence that gene G7a in the human major histocompatibility complex encodes valyl-tR-NA synthetase. Biochem. J. 278, 809–816.

    PubMed  Google Scholar 

  • Kendall, E., Sargent, C.A., Campbell, R.D. (1990). Human major histocompatibility complex contains a new cluster of genes between the HLA-D and complement C4 loci. Nucleic Acids Res. 18, 7251–7257.

    PubMed  Google Scholar 

  • Klein, J. (1986). Natural History of the Major Histocompatibility Complex. (New York: John Wiley & Sons).

    Google Scholar 

  • Lafuse, W.P., Lanning, D., Spies, T., David, C.S. (1992). PFGE mapping and RFLP analysis of the S/D region of the mouse H-2 complex. Immunogenetics 36, 110–116.

    Article  PubMed  Google Scholar 

  • Lund, T., Shaikh, S., Kendall, E., Campbell, R.D., Hattori, M., Makino, S., Cooke, A. (1993). RFLP analysis of the MHC class III region defines unique haplotypes for the non-obese diabetic, cataract Shionogi and non-obese non-diabetic mouse strains. Diabetologia 36, 727–733.

    PubMed  Google Scholar 

  • Milner, C.M., Campbell, R.D. (1990). Structure and expression of the three MHC-linked HSP70 genes. Immunogenetics 32, 242–251.

    Article  PubMed  Google Scholar 

  • Muller, U., Jongeneel, C.V., Nedospasov, S.A., Lindahl, K.F., Steinmetz, M. (1987). Tumour necrosis factor and lymphotoxin genes map close to H-2D in the mouse major histocompatibility complex. Nature 325, 265–267.

    Article  PubMed  Google Scholar 

  • Sargent, C.A., Dunham, I., Campbell, R.D. (1989). Identification of multiple HTF-island associated genes in the human major histocompatibility complex class III region. EMBO J. 8, 2305–2312.

    PubMed  Google Scholar 

  • Snoek, M., Jansen, M., Olavesen, M.G., Campbell, R.D., Teuscher, C., van Vugt, H. (1993). Three Hsp70 genes are located in the C4-H-2D region, possible candidates for the Och-1 locus. Genomics 15, 350–356.

    Article  PubMed  Google Scholar 

  • Spies, T., Blanck, G., Bresnahanm, M., Sands, J., Strominger, J.L. (1989). A new cluster of genes within the human major histocompatibility complex. Science 243, 214–217.

    PubMed  Google Scholar 

  • Spies, T., Bresnahan, M., Bahram, S., Arnold, D., Blanck, G., Mellins, E., Pious, D., DeMars, R. (1990). A gene in the human major histocompatibility complex class II region controlling the class I antigen presentation pathway. Nature 348, 744–747.

    Article  PubMed  Google Scholar 

  • Steinmetz, M., Stephan, D., Fisher, K.L. (1986). Gene organization and recombinational hotspots in the murine major histocompatibility complex. Cell 44, 895–904.

    Article  PubMed  Google Scholar 

  • Tosi, M., Lévi-Strauss, M., Duponchel, C., Meo, T. (1984). Sequence heterogeneity of murine complementary DNA clones related to the C4 and C4-SLP isoforms of the fourth complement component. Philos. Trans. R. Soc. Lond. Biol. 306, 389–394.

    PubMed  Google Scholar 

  • Trowsdale, J., Ragoussis, J., Campbell, R.D. (1991). Map of the human MHC. Immunol. Today 12, 443–446.

    PubMed  Google Scholar 

  • Wroblewski, J.M., Kaminsky, S.G., Milisauskas, V.K., Pittman, A.M., Chaplin, D.D., Spies, T., Nakamura, I. (1990). The B144-H-2Db interval and the location of a mouse homologue of the human D6S81E locus. Immunogenetics 32, 200–204.

    PubMed  Google Scholar 

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Lund, T., Carter, C. & Campbell, R.D. Pulsed field gel electrophoretic analysis of the rat major histocompatibility complex class III region shows extensive inter-species conservation. Mammalian Genome 5, 282–287 (1994). https://doi.org/10.1007/BF00389542

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  • DOI: https://doi.org/10.1007/BF00389542

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