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Efficient identification and regional positioning of YAC and cosmid clones to human Chromosome 21 by radiation fusion hybrids

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Abstract

The use of integrated mapping strategies involving bacterial, yeast, and rodent cells as hosts simplifies the construction of maps, which combine long-range order, high resolution, and easy access to the cloned DNA. Radiation-fusion hybrids offer a specially powerful long-range mapping system for human chromosomes. We describe here techniques for establishing a radiation-fusion hybrid map of Chromsome (Chr) 21 q and its integration with local information on YAC and cosmid positions.

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References

  • Albertsen, H.M., Abderrahim, H.C., Dausset, J., Le Paslier D., Cohen, D. (1990). Construction and characterization of yeast artificial chromosome library containing seven haploid human genome equivalents. Proc. Natl. Acad. Sci. USA 87, 4256–4260.

    Google Scholar 

  • Baldini, A., Ross, M.T., Nizetic, D., Vatcheva, R., Lindsay, E.A., Lehrach, H., Siniscalco, M. (1992). Chromosomal assignment of human YAC clones by fluorescence in situ hybridization. Use of single yeast-colony-PCR and multiple labelling. Genomics 14, 181–184.

    Google Scholar 

  • Baxendale, S., Bates, G.P., MacDonald, M.E., Gusella, J.F., Lehrach H. (1991). The direct screening of cosmid libraries with YAC clones. Nucleic Acids Res. 19, 6651.

    Google Scholar 

  • Bruke, D.T., Carle, G.F., Olson, M.V. (1987). Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 236, 806–812.

    Google Scholar 

  • Chumakov, I., Rigault, P., Guillou S., Ougen, P., Billaut, A., Guasconi, G., Gervy, P., LeGall, I., Soularue, P., Grinas, L, Bougelueret, L., Bellanné-Chantelot, C., Lacroix, B., Barrillot, E., Gesnouin, P., Pook, S., Vaysseix, G., Frelat, G., Schmitz, A., Sambucy, J-L., Bosch, A., Estivilli, X., Weissenbach, J., Vignal, A., Riethman, H., Cox, D., Patterson, D., Gardiner, K., Hattori, M., Sakaki, Y., Ischikawa, H., Ohki, M., Le Paslier, D., Heilig, R., Antonarakis, S., Cohen, D. (1992). Continuum of overlapping clones spanning the entire human chromosome 21q. Nature 359, 380–387.

    Google Scholar 

  • Cole, C.G., Goodfellow, P.N., Borrow, M., Bentley, D.R. (1991). Generation of novel sequence tagged sites (STSs) from discrete chromosomal regions using alu-PCR. Genomics 10, 816–826.

    Google Scholar 

  • Feinberg, A., Vogelstein, B. (1984). A technique for radio-labelling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132, 6–13.

    Google Scholar 

  • Goss, S.J., Harris, H. (1975). New method for mapping genes in human chromosomes. Nature 255, 679–684.

    Google Scholar 

  • Graw, S.L., Buckler, A.J., Britt, D.E., Jackson, C.L., Taruscio, D., Baldini, A., Ward, D.C., Housman, D.E. (1992) Generation and characterization of a human chromosome 9 cosmid library. Somatic Cell Mol. Genet. 18, 269–284.

    Google Scholar 

  • Jackson, C.L., Britt, D.E., Graw, S.L., Potts, A., Santoro, K., Buckler, A.J., Housman, D., Mark, H-F. (1992). Construction and characterization of radiation hybrids for chromosome 9, and their use in mapping cosmid probes on the chromosome. Somatic Cell Mol. Genet. 18, 285–301.

    Google Scholar 

  • Larin, Z., Monaco, A.P., Lehrach, H. (1990). Yeast artificial chromosome libraries containing large inserts from mouse and human DNA. Proc. Natl. Acad. Sci. USA 88, 4123–4127.

    Google Scholar 

  • Lehrach, H., Dramanac, R., Hoheisel, J., Larin, Z., Lennon, G., Monaco, A.P., Nizetic, D., Zehetner, G., Poustka, A. (1990). Genetic and physical mapping. In Genome Analysis, Davies, K.E., Tilghman, S.M. (eds.), Vol. 1, (Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press), pp. 39–81.

    Google Scholar 

  • McCormick, M.K., Campbell, E., Deaven, L., Moyzis, R. (1993). Low-frequency chimeric yeast artificial chromosome libraries from flowsorted human chromosomes 16 and 21. Proc. Natl. Acad. Sci. USA 90, 1063–1067.

    Google Scholar 

  • Meier-Ewert, S., Maier, E., Ahmadi, A., Curtis, J., Lehrach, H. (1993). An automated approach to generating expressed sequence catalogues. Nature 361, 375–376.

    Google Scholar 

  • Monaco, A.P., Lam, V.M.S., Zehetner, G., Lennon, G.G., Douglas, C., Nizetic, D., Goodfellow, P.N., Lehrach, H. (1991). Mapping irradiation hybrids to cosmid and yeast artificial chromosome libraries by direct hybridization to alu-PCR products. Nucleic Acids Res. 19, 3315–3318.

    Google Scholar 

  • Monaco, A.P., Walker, A.P., Millwood, I., Larin, Z., Lehrach, H. (1992). A yeast artificial chromosome contig containing the complete Duchenne muscular dystrophy gene. Genomics 12, 465–473.

    Google Scholar 

  • Nelson, D.L., Ledbetter, S.A., Corbo, L., Victoria, M.F., Ramirez-Solis, R., Webster, T.D., Ledbetter, D.H., Caskey, C.T. (1989). Alu polymerase chain reaction: a method. Proc. Natl. Acad. Sci. USA 86, 6686–6690.

    Google Scholar 

  • Nizetic, D., Drmanac, R., Lehrach, H. (1990). An improved bacterial colony lysis procedure enables direct DNA hybridization using short (10, 11 bases) oligonucleotides to cosmids. Nucleic Acids Res. 19, 182.

    Google Scholar 

  • Nizetic, D., Zehetner, G., Monaco, A.P., Gellen, L., Young, B.D., Lehrach, H. (1991) Construction, arraying, and high-density screening of large insert libraries of human chromosomes X and 21: their potential use as reference libraries. Proc. Natl. Acad. Sci. USA 88, 3233–3237.

    Google Scholar 

  • Patterson, D. (1991). Workshop on human chromosome 21. Cytogenet. Cell Genet. 57, 167–174.

    Google Scholar 

  • Potier, M-C., Kuo, W.L., Dutriaux, A., Gray, J., Goeder, M. (1992). Construction and characterization of a yeast artificial chromosome library containing 1.5 equivalents of human chromosome 21. Genomics 14, 481–483.

    Google Scholar 

  • Ross, M.T., Hoheisel, A.P., Monaco, A.P., Larin, Z., Zehetner, G., Lehrach, H. (1992a). High-density gridded YAC filters: their potential as genome mapping tool. In Techniques for the Analysis of Complex Genomes, Anand, R. (ed.) (London: Academic Press), pp. 137–153.

    Google Scholar 

  • Ross, M.T., Nizetic, D., Nguyen, C., Knights, C., Vatcheva, R., Burden, N., Douglas, C., Zehetner, G., Ward, D.C., Baldini, A., Lehrach, H. (1992b). Selection of a human chromosome 21 enriched YAC sub-library using a chromosome-specific composite probe. Nature Genet. 1, 284–290.

    Google Scholar 

  • Saiki, R.K., Gefland, D.H., Stoffel, S., Scharf, S.J., Higuchi, R., Horn, G.T., Mullis, K.B., Erlich, H.A. (1988). Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239, 487–491.

    Google Scholar 

  • Sambrook, J., Fritsch, E.F., Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd ed. (Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press).

    Google Scholar 

  • Tanzi, R.E., Romano, D.M., Berger, R., Buraczynska, M.J., Gaston, S.M.. Kurnit, D.M., Patterson, D., Gusella, J.F., Stewart, G.D. (1992). Sequence-tagged sites (STSs) for a set of mapped markers on chromosome 21. Genomics 14, 498–502.

    Google Scholar 

  • Wada, M., Little, R.D., Abidi, F., Porta, G., Labella, T., Cooper, T., Della Valle, G., D-Urso, M., Schlessinger, D. (1990). Human Xq24–Zq28: approaches to mapping with Yeast Artificial Chromosomes. Am. J. Hum. Genet. 46, 95–106.

    Google Scholar 

  • Zoghbi, H.Y., McCall, A.E., LeBorgne-Demarquoy, F. (1991). Sixty-five radiation hybrids for the short arm of human chromosome 6: their value as a mapping panel and as a source for rapid isolation of new probes using repeat element-mediated PCR. Genomics 9, 713–720.

    Google Scholar 

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Kumlien, J., Labella, T., Zehetner, G. et al. Efficient identification and regional positioning of YAC and cosmid clones to human Chromosome 21 by radiation fusion hybrids. Mammalian Genome 5, 365–371 (1994). https://doi.org/10.1007/BF00356556

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  • DOI: https://doi.org/10.1007/BF00356556

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