Abstract
Eighty sequences from the mouse genome database containing microsatellites (simple sequence repeats) have been analyzed for size variation among ten different inbred strains of mice; 62/80 (77.5%) showed polymorphism of at least three alleles. We have been able to detect all the polymorphims by agarose gel electrophoresis, often running the gels for up to 3 h. Between individual pairs of mouse strains to be used in chromosomal mapping studies in our laboratory, 35–60% polymorphism occurred. There are potentially enough microsatellites within the mouse and human genome to have a marker at every 1-cM distance. This simple approach will, therefore, continue to be useful in genome mapping studies, leading eventually to high-resolution maps of both the mouse and human genomes; this should allow for physical mapping and cloning of specific genes.
Similar content being viewed by others
References
Aitman, T.J., Hearne, C.M., McAleer, M.A., and Todd, J.A.: Mononucleotide repeats are an abundant source of length variants in mouse genomic DNA. Mammalian Genome 1: 206–210, 1991.
Bailey, D.W.: Recombinant inbred strains and bilineal congenic strains. In H.L. Foster, J.D. Small, and J.G. Fox (eds.); The Mouse in Biomedical Research, Vol. 1, pp 223–239, Academic Press Inc., New York, 1981.
Cornall, R.J., Aitman, T.J., Hearne, C.M., and Todd, J.A.: The generation of a library of PCR-analysed microsatellite variants for genetic mapping of the mouse genome. Genomics 10: 874–881, 1991.
Hamada, H., Petrino, M.G., and Kakunaga, T.: A novel repeat element with Z-DNA-forming potential is widely found in evolutionarily diverse eukaryotic genomes. Proc Natl Acad Sci USA 79: 6465–6469, 1982.
Hearne, C.M., McAleer, M.A., Love, J.M., Aitman, T.J., Cornall, R.J., Ghosh, S., Knight, A.M., Prins, J-B., and Todd, J.A.: Additional microsatellite markers for mouse genome mapping. Mammalian Genome 1: 273–282, 1991.
Litt, M. and Luty, J.A.: A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet 44: 397–401, 1989.
Love, J.M., Knight, A.M., McAleer, M.A., and Todd, J.A.: Towards construction of a high resolution map of the mouse genome using PCR-analyzed microsatellites. Nucleic Acids Res 18: 4123–4130, 1990.
Maniatis, T., Fritsch, E.F., and Sambrook, J.: Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1982.
Montagutelli, X., Serikawa, T., and Guénet, J.-L.: PCR-analyzed microsatellites: data concerning laboratory and wild-derived mouse inbred strains. Mammalian Genome 1: 255–259, 1991.
Saiki, R.K., Gelfand, D.H., Stoffel, S., Scharf, S.J., Higushi, R., Horn, G.T., Mullis, K.B., and Erlich, H.A.: Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239: 487–491, 1988.
Tautz, D.: Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res 17: 6463–6471, 1989.
Taylor, B.A.: Recombinant inbred strains. In M.F. Lyon and A.G. Searle (eds.); Genetic Variants and Strains of the Laboratory Mouse, 2nd edition, pp. 773–798, Oxford University Press, New York, 1989.
Tomonari, K. and Lovering, E.: T cell receptor specific monoclonal antibodies against a Vb11-positive mouse T cell clone. Immunogenetics 28: 445–451, 1988.
Weber, J.L. and May, P.E.: Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44: 388–396, 1989.
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Fowlis, G.A., Adelman, S., Knight, A.M. et al. PCR-analyzed microsatellites of the mouse genome—additional polymorphisms among ten inbred mouse strains. Mammalian Genome 3, 192–196 (1992). https://doi.org/10.1007/BF00355718
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/BF00355718