Abstract
Based on a data-base search, the sequences of 32 Bovidae retroposon elements have been compared. Two conserved areas are identified, and one of the corresponding sequences of the derived bovine consensus was used to design oligonucleotides as primer molecules for random DNA amplification of Bovidae DNA. Such a primer binding site should occur on average every 10,000 bp in the bovine genome, as suggested by a survey of published sequences. This estimate about the distribution of these possible primer binding sites was experimentally substantiated by mapping four of these primer binding sites within 40 kb of contiguous bovine DNA, carrying the heretofore undescribed bovine lactoferrin gene. Furthermore, these conserved, ubiquitous sequence motifs prove to be useful for mapping of bovine DNA.
Similar content being viewed by others
References
Aslanidis, C. and DeJong, P.J. (1991). Coincidence cloning of Alu-PCR products. Proc. Natl. Acad. Sci. USA 88, 6765–6769
Duncan, C.H. (1987). Novel alu-type repeat in artiodactyla. Nucleic Acids Res. 15, 1340.
Georgiev, G.P. (1984). Mobile genetic elements in animal cells and their biological significance. Eur. J. Biochem. 145, 203–220.
Jeffreys, A.J., Neumann, R., and Wilson, V. (1990). Repeat unit variation in minisatellites: a novel source of DNA polymorphism for studying variation and mutation by single molecule analysis. Cell 60, 473–485.
Kariya, Y., Kato, K., Hayashizaki, Y., Himeno, S., Tarui, S., and Matsubara, K. (1987). Revision of consensus sequence of human Alu repeats—a review. Gene 53, 1–10.
Kaukinen, J. and Varvio, S.L. (1992). Artiodactyla retroposons: association with microsatellites and use in SINEmorph detection by PCR. Nucleic Acids Res. 20, 2955–2958.
Koczan, D., Hobom, G., and Seyfert, H.-M. (1991). Genomic organization of the bovine α-S1 casein gene. Nucleic Acids Res. 19, 5591–5596.
Nelson, D.L. and Caskey, C.T. (1989). Alu PCR: the use of repeat sequence primers for amplification of human DNA from complex sources. In PCR-Technology, H. Ehrlich, ed. (New York: Stockton Press), pp. 113–118.
Pearson, W.R. and Lipman, D.J. (1988). Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444–2448.
Skowronski, J., Plucienniczak, A., Bednarek, A., and Jaworski, J. (1984). Bovine 1.709 satellite. Recombination hotspots and dispersed repeated sequences. J. Mol. Biol. 177, 399–416.
Stallings, R.L., Torney, D.L., Hildebrand, C.E., Longmire, J.L., Deaven, L.L., Jett, J.H., Dogett, N.A., and Moyzis, R.K. (1990). Physical mapping of human chromosome by repetitive sequence fingerprinting. Proc. Natl. Acad. Sci. USA 87, 6218–6222.
Watanabe, Y., Tsukada, T., Notake, M., Nakanishi, S., and Numa, S. (1982). Structural analysis of repetitive DNA sequences in the bovine corticotropin β lipoprotein precursor gene region. Nucleic Acids Res. 10, 1459–1469.
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Seyfert, HM., Interthal, H., Hahnen, J. et al. Definition, distribution, and use of a conserved Bovidae retroposon element sequence motif. Mammalian Genome 4, 153–158 (1993). https://doi.org/10.1007/BF00352231
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/BF00352231