Skip to main content
Log in

Rad3 protein of Saccharomyces cerevisiae: Overexpression and preliminary characterization using specific antibodies

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

The cloned RAD3 gene of Saccharomyces cerevisiae was tailored into expression vectors for overexpression of Rad3 protein in Escherichia coli and in yeast. In both organisms the overexpressed protein is detected as a species of molecular weight ca. 90 kDa, the size expected from the sequence of the cloned gene. The protein overexpressed in E. coli is largely insoluble; however the insoluble fraction was used to generate affinity-purified polyclonal antisera which proved to be powerful reagents for the initial characterization of Rad3 protein expressed in yeast. These studies showed that: (1) when overexpressed in yeast most of the Rad3 protein is detected in the soluble fraction of cell extracts; (2) endogenous Rad3 protein is untransformed cells is also ca. 90 kDa in size and is located in the cell nucleus; (3) Rad3/β-galactosidase fusion protein partially purified on an affinity matrix is associated with DNA-dependent ATPase activity that is inhibited in the presence of anti-Rad3 antibodies, suggesting that Rad3 protein is an ATPase; and (4) Rad3 antibodies cross-react with two electrophoretically distinguishable polypeptides present in the nuclear fraction of human cells, and with a single polypeptide in extracts of Drosophila cell.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Abdel-Monem M, Chanel MC, Hoffmann-Berling H (1977) DNA unwinding enzyme II of Escherichia coli: 1. Purification and characterization of the ATPase activity. Eur J Biochem 79:33–38

    Google Scholar 

  • Arther MH, Bramhill D, Eastlake PB, Emmerson PT (1982) Cloning of the uvrD gene of E. coli and identification of the product. Genet 19:285–295

    Google Scholar 

  • Boer HA de, Comstock LJ, Vasser M (1983) The tac promoter: a functional hybrid derived from the trp and lac promoters. Proc Natl Acad Sci USA 80:21–25

    Google Scholar 

  • Chang LMS, Rafte E, Augl C, Bollum FJ (1984) Purification of a DNA polymerase-DNA primase complex from calf thymus glands. J Biol Chem 259:14679–14687

    Google Scholar 

  • Chenevert JM, Naumovski L, Schultz RA, Friedberg EC (1986) Partial complementation of the UV sensitivity of E. coli and yeast excision repair mutants by the cloned denV gene of bacteriophage T4. Mol Gene Genet 203:163–171

    Google Scholar 

  • Duin M van, Wit J de, Odijk H, Westerveld A, Yasui A, Koken MHM, Hoeijmakers JHJ, Bootsma D (1986) Molecular characterization of the human excision repair gene ERCC1: cDNA cloning and amino acid homology with the yeast DNA repair gene RAD10. Cell 44:913–923

    Google Scholar 

  • Foury F, Lahaye A (1987) Cloning and sequencing of the PIF gene involved in repair and recombination of yeast mitochondrial DNA. EMBO J 6:1441–1449

    Google Scholar 

  • Friedberg EC (1985) Nucleotide excision repair of DNA in eukaryotes: comparisons between human cells and yeast. Cancer Surveys 4:529–555

    Google Scholar 

  • Friedberg EC (1988) DNA repair in the yeast Saccharomyces cerevisiae. Microbiol Rev 52:10–102

    Google Scholar 

  • Hall MN, Hereford L, Herskowitz I (1984) Targeting of E. coli β-galactosidase to the nucleus in yeast. Cell 36:1057–1065

    Google Scholar 

  • Higgins DR, Prakash S, Reynolds P, Polakowska R, Weber S, Prakash L (1983) Isolation and characterization of the RAD3 gene of Saccharomyces cerevisiae and inviability of rad3 deletion mutants. Proc Natl Acad Sci USA 80:5680–5684

    Google Scholar 

  • Kumara K, Sekiguchi M (1984) Identification of the uvrD gene product of Escherichia coli as DNA helicase II and its induction by DNA-damaging agents. J Biol Chem 259:1560–1565

    Google Scholar 

  • Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685

    Google Scholar 

  • Lee SH, Walker RJ (1987) Escherichia coli DnaX product, the subunit of DNA polymerase II, is a multifunctional protein with single-stranded DNA-dependent ATPase activity. Proc Natl Acad Sci USA 84:2713–2717

    Google Scholar 

  • Lucchini G, Hinnebusch A, Chen C, Fink GR (1984) Positive regulatory interactions of the HIS4 gene of Saccharomyces cerevisiae. Mol Cell Biol 4:1326–1333

    Google Scholar 

  • Maples VF, Kushner SR (1982) DNA repair in Escherichia coli: identification of the uvrD gene product. Proc Natl Acad Sci USA 79:5616–5620

    Google Scholar 

  • Naumovski L, Friedberg EC (1983) A DNA repair gene required for the incision of damaged DNA is essential for viability in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 80:4818–4821

    Google Scholar 

  • Naumosvki L, Friedberg EC (1986) Analysis of the essential and excision repair functions of the RAD3 gene of Saccharomyces cerevisiae by mutagenesis. Mol Cell Biol 6:1218–1227

    Google Scholar 

  • Naumovski L, Friedberg EC (1987) The RAD3 gene of Saccharomyces cerevisiae: isolation and characterization of a temperature-sensitive mutant in the essential function and of extragenic suppressors of this mutant. Mol Gen Genet 209:458–466

    Google Scholar 

  • Naumovski L, Chu G, Berg P, Friedberg EC (1985) RAD3 gene of Saccharomyces cerevisiae: nucleotide sequence of wild-type and mutant alleles, transcript mapping and aspects of gene regulation. Mol Cell Biol 5:17–26

    Google Scholar 

  • Nicolet CM, Friedberg EC (1987) Overexpression of the RAD2 gene of S. cerevisiae: identification and preliminary characterization of Rad2 protein. Yeast 3:149–160

    Google Scholar 

  • Oeda K, Horiuchi T, Sekiguchi M (1982) The uvrD gene of E. coli encodes a DNA-dependent ATPase. Nature 298:98–100

    Google Scholar 

  • Oshima Y (1981) Regulatory circuits for gene expression: the metabolism of galactose and phosphate. In: Strathern JN, Jones EW, Broach JR (eds) The molecular biology of the yeast Saccharomyces: metabolism and gene expression. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp 159–180

    Google Scholar 

  • Plevani P, Bandaracco G, Chang LS (1980) Purification and characterization of two forms of DNA-dependent ATPase from yeast. J Biol Chem 255:4957–4963

    Google Scholar 

  • Reynolds P, Higgins DR, Prakash L, Prakash S (1985) The nucleotide sequence of the RAD3 gene of Saccharomyces cerevisiae: a potential adenine nucleotide binding amino acid sequence and a nonessential carboxyl terminal domain. Nucleic Acids Res 13:2357–2372

    Google Scholar 

  • Seeberg E, Steinum A-L (1982) Purification and properties of the uvrA protein from Escherichia coli. Proc Natl Acad Sci USA 79:988–992

    Google Scholar 

  • Sharma SK (1986) On the recovery of genetically engineered proteins from Escherichia coli. Separation Sci Technol 21:701–726

    Google Scholar 

  • Silver PA, Keegan LP, Ptashne M (1984) Amino terminus of the yeast GAL4 gene product is sufficient for nuclear localization. Proc Natl Acad Sci USA 81:5951–5955

    Google Scholar 

  • Sugino A, Ryu BH, Sugino T, Naumovski L, Friedberg EC (1986) A new DNA-dependent ATPase which stimulates yeast DNA polymerase I and has DNA unwinding activity. J Biol Chem 261:11744–11750

    Google Scholar 

  • Sung P, Prakash L, Weber S, Prakash S (1987) The RAD3 gene of Saccharomyces cerevisiae encodes a DNA-dependent AT-Pase. Proc Natl Acad Sci USA 84:6045–6049

    Google Scholar 

  • Ullman A (1984) One-step purification of hybrid proteins which have β-galactosidase activity. Gene 29:27–31

    Google Scholar 

  • Walker JE, Saraste M, Runswick MJ, Gray NJ (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases, and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1:945–951

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by R. Devoret

Rights and permissions

Reprints and permissions

About this article

Cite this article

Naumovski, L., Friedberg, E.C. Rad3 protein of Saccharomyces cerevisiae: Overexpression and preliminary characterization using specific antibodies. Mol Gen Genet 213, 400–408 (1988). https://doi.org/10.1007/BF00339609

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00339609

Key words

Navigation