Skip to main content
Log in

Identification and estimation algorithm for stochastic neural system

  • Published:
Biological Cybernetics Aims and scope Submit manuscript

Abstract

An algorithm for the estimation of stochastic processes in a neural system is presented. This process is defined here as the continuous stochastic process reflecting the dynamics of the neural system which has some inputs and generates output spike trains. The algorithm proposed here is to identify the system parameters and then estimate the stochastic process called neural system process here. These procedures carried out on the basis of the output spike trains which are supposed to be the data observed in the randomly missing way by the threshold time function in the neural system. The algorithm is constructed with the well-known Kalman filters and realizes the estimation of the neural system process by cooperating with the algorithm for the parameter estimation of the threshold time function presented previously (Nakao et al., 1983). The performance of the algorithm is examined by applying it to the various spike trains simulated by some artificial models and also to the neural spike trains recorded in cat's optic tract fibers. The results in these applications are thought to prove the effectiveness of the algorithm proposed here to some extent. Such attempts, we think, will serve to improve the characterizing and modelling techniques of the stochastic neural systems.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Arimoto, S.: Kalman, filter. Tokyo: Sangyo Tosho 1977 (in Japanese)

    Google Scholar 

  • Box, G.E.P., Jenkins, G.M.: Time series analysis, forecasting, and control. San Francisco: Holden Day 1970

    Google Scholar 

  • Brillinger, D.R.: The identification of point process systems. Ann. Probability 3, 909–929 (1975)

    Google Scholar 

  • Clay, J.R., Goel, N.S.: Diffusion models for firing of a neuron with varying threshold. J. Theor. Biol. 39, 633–644 (1973)

    Google Scholar 

  • Enroth-Cugell, C., Robson, J.G.: The contrast sensitivity of retinal ganglion cells of the cat. J. Physiol. (London) 187, 517–552 (1966)

    Google Scholar 

  • Fukushima, Y., Nakao, M., Munemori, J., Hara, K.-I., Kimura, M., Sato, R.: Spatio-temporal organization of the cat retinal ganglion cells. Papers of Tech. Group Med. Electron. Bion. I.E.C.E. Japan, MBE 82-34 (1982)

  • Hagiwara, S., Omura, Y.: The critical depolarization for the spike in the squid giant axon. Japan J. Physiol. 8, 234–245 (1958)

    Google Scholar 

  • Inbar, G.F., Milgram, P.: Estimation of intracellular potential from evoked neural pulse trains. IEEE Trans. Biomed. Eng. BME-22, 379–383 (1975)

    Google Scholar 

  • Jazwinski, A.H.: Stochastic processes and filtering theory. New York: Academic Press 1970

    Google Scholar 

  • Jenik, F., Hoehne, H.: Über die Impulsverarbeitung eines mathematischen Neuronenmodells. Kybernetik 3, 109–128 (1966)

    Google Scholar 

  • Kostyukov, A.I.: Curve-crossing problem for Gaussian stochastic processes and its applications to neural modelling. Biol. Cybern. 29, 187–191 (1978)

    Google Scholar 

  • Kostyukov, A.I., Ivanov, Yu.N., Kryzhanovsky, M.V.: Probability of neural spike initiation as a curve-crossing problem for Gaussian stochastic process. Biol. Cybern. 39, 157–163 (1981)

    Google Scholar 

  • Marmarelis, P.Z., Marmarelis, V.Z.: Analysis of physiological systems. New York, London: Plenum Press 1978

    Google Scholar 

  • Maffei, L., Cervetto, L., Fiorentini, A.: Transfer characteristics of excitation and inhibition in cat retinal ganglion cells. J. Neurophysiol 33, 276–284 (1970)

    Google Scholar 

  • Nakahama, H., Aya, K., Yamamoto, M., Fujii, H., Shima, K.: Dependency representing markov properties of nonstationary spike trains recorded from the cat's optic tract fibers. Biol. Cybern. 35, 43–54 (1979)

    Google Scholar 

  • Nakao, M., Fukushima, Y., Kimura, M., Sato, R.: Spatiotemporal organization of cat retinal ganglion cells. Papers of Tech. Group on Med. and Bion. I.E.C.E. Japan, MBE80-117 (1981)

  • Nakao, M., Hara, K.-I., Kimura, M., Sato, R.: Parameter estimation of the threshold time function in the neural system. Biol. Cybern. 48, 131–137 (1983)

    Google Scholar 

  • Narita, S.: Methods for system engineering. Tokyo: Corona sha 1970 (in Japanese)

    Google Scholar 

  • Perkel, D.H., Gerstein, G.L., Moore, G.P.: Neuronal spike trains and stochastic point processes. I, II. Biophys. J. 7, 391–440 (1967)

    Google Scholar 

  • Sakai, H., Soeda, T., Tokumaru, H.: On the relation between fitting autoregression and periodgram with applications. Ann. Statistics 7, 96–107 (1979)

    Google Scholar 

  • Shapley, R.M., Victor, J.D.: The effect of contrast on the transfer properties of the cat retinal ganglion cells. J. Physiol. (London) 285, 275–298 (1978)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Nakao, M., Hara, Ki., Kimura, M. et al. Identification and estimation algorithm for stochastic neural system. Biol. Cybern. 50, 241–249 (1984). https://doi.org/10.1007/BF00337074

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00337074

Keywords

Navigation