Skip to main content
Log in

Apparent operon for a 5S ribosomal RNA gene and for tRNA genes in the archaebacterium Methanococcus vannielii

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

The nucleotide sequence of the chromosomal segment from Methanococcus vannielii previously shown to encode a gene for 5S ribosomal RNA (rRNA) unlinked to any other rRNA genes (Jarsch et al. 1983) was determined. It was foud that the 5S rRNA gene is flanked by seven genes for tRNA (tRNAPro, tRNAThr, tRNATyr, tRNALys and tRNAAsp). Two of the tRNA genes (tRNAAsp and tRNALys) are repeated in the cluster. Only the tRNAPro cistron encodes the 3′-CCA tRNA sequence. The 5S rRNA/tRNA gene cluster probably represents one transcriptional unit. The 5′- and 3′-flanking sequences of the tRNA/5S rRNA gene cluster bear some similarity with initiation and termination signals in eubacteria. There is indication that the different 5S rRNA genes from Methanococcus exhibit sequence polymorphism.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucl Acids Res 7:1513–1523

    Google Scholar 

  • De Boer HA, Gilbert SF, Nomura M (1979) DNA sequences of promotor regions for rRNA-operons rrnE and rrnA in E. coli. Cell 17:201–209

    Google Scholar 

  • Duester C, Campen RK, Holmes WM (1981) Nucleotide sequence of an E. coli tRNA (Leu1) operon and identification of the transcription promoter signal. Nucl Acids Res 9:2121–2139

    Google Scholar 

  • Erdmann VA, Huysmans E, Vandenberghe A, De Wachter R (1983) Collection of published 5S and 5.8S ribosomal RNA sequences and their precursors. Nucl Acids Res r93–r115

  • Fox GE, Woese CR (1975) 5S RNA secondary structure. Nature 256:505–507

    Google Scholar 

  • Fox GE, Luehrsen KR, Woese CR (1982) Archaebacterial 5S rRNA. Zbl Bakt Hyg I. Abt Orig C 3:330–345

    Google Scholar 

  • Gauss DH, Sprinzl M (1983) Compilation of tRNA sequences. Nucl Acids Res 11:1–53

    Google Scholar 

  • Goodman HM, Olson MV, Hall BD (1977) Nucleotide sequence of a mutant eukaryotic gene: The, yeast tyrosine-inserting ochresuppressor SUP40. Proc Natl Acad Sci USA 74:5453–5458

    Google Scholar 

  • Green JCh, Vold BS (1983) Sequence analysis of a cluster of twenty-one tRNA genes in Bacillus subtilis. Nucl Acids Res 11:5763–5774

    Google Scholar 

  • Gray CP, Sommer R, Polke C, Beck E, Schaller H (1978) Structure of the origin of DNA replication of bacteriophage fd. Proc Natl Acad Sci USA 75:50–53

    Google Scholar 

  • Gu XR, Nicoghosian K, Cedergren RJ, Wong JTF (1983) Sequences of halobacterial tRNA's and the paucity of U in the first position of their anticodons. Nucl Acids Res 11:5433–5442

    Google Scholar 

  • Jarsch M, Böck A (1983) DNA sequence of the 16S rRNA/23S rRNA intercistronic spacer of two rDNA operons of the Archaebacterium Methanococcus vannielii Nucl Acids Res 11:7537–7544

    Google Scholar 

  • Jarsch M, Altenbuchner J, Böck A (1983) Physical organization of the genes for ribosomal RNA in Methanococcus vannielii. Mol Gen Genet 189:41–47

    Google Scholar 

  • Kaine BP, Gupta R, Woese CR (1983) Putative introns in tRNA genes of prokaryotes. Proc Natl Acad Sci USA 80:3309–3312

    Google Scholar 

  • Karabin GD, Narita JO, Dodd JR, Hallick RB (1983) Euglena gracilis chloroplast ribosomal RNA transcription units. J Biol Chem 258:14790–14796

    Google Scholar 

  • Luehrsen KR, Fox GE (1981) Secondary structure of eukaryotic cytoplasmic 5S ribosomal RNA. Proc Natl Acad Sci USA 78:2150–2155

    Google Scholar 

  • Magrum LJ, Luehrsen KR, Woese CR (1978) Are extreme halophiles actually “bacteria”? J Mol Evol 11:1–8

    Google Scholar 

  • Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning. Cold Spring Harbour Laboratory, Cold Spring Harbour, NY, pp 134–139, 392–398

    Google Scholar 

  • Maxam AM, Gilbert W (1980) In: Grossmann L, Moldave K (eds) Methods in Enzymology, vol 65. Academic Press, New York, pp 499–560

    Google Scholar 

  • Nakajima N, Ozcki H, Shimura Y (1981) Organization and structure of an E. coli tRNA operon containing seven tRNA genes. Cell 23:239–249

    Google Scholar 

  • Neumann H, Gierl A, Tu J, Leibrock J, Staiger D, Zillig W (1983) Organization of the genes for ribosomal RNA in Archaebacteria. Mol Gen Genet 192:66–72

    Google Scholar 

  • Nishikawa K, Takemara S (1974) Structure and function of 5S ribosomal ribonucleic acid from Torulopsis utilis. J Biochem 76:935–947

    Google Scholar 

  • Ogasawara N, Moriya S, Yoshikawa H (1983) Structure and organization of rRNA operons in the region of the replication origin of the B. subtilis chromosome. Nucl Acids Res 11:6301–6317

    Google Scholar 

  • Pribnow D (1975) Nucleotide sequence of a RNA polymerase binding site at an early T7 promotor. Proc Natl Acad Sci USA 72:784–788

    Google Scholar 

  • Robinson RR, Davidson N (1981) Analysis of a Drosophila tRNA gene cluster: Two tRNALeu genes contain intervening sequences. Cell 23:251–259

    Google Scholar 

  • Rosenberg M, Court D (1979) Regulatory sequences involved in the promotion and termination of RNA transcription. Ann Rev Genet 13:319–353

    Google Scholar 

  • Schaller H, Gray C, Herrmann K (1975) Nucleotide sequence of an RNA polymerase binding site from the DNA of bacteriophage fd. Proc Natl Acad Sci USA 72:737–741

    Google Scholar 

  • Tomioka N, Sugiura M (1984) Nucleotide sequence of the 16S-23S spacer region in the rrnA operon from a blue-green alga, Anacystis nidulans. Mol Gen Genet 193:427–430

    Google Scholar 

  • Valenzuela P, Venegas A, Weinberg F, Bishop R, Rutter WJ (1978) Structure of yeast phenylalanine-tRNA genes: An intervening DNA segment within the region coding for the tRNA. Proc Natl Acad Sci USA 75:190–194

    Google Scholar 

  • Venegas A, Quiroga M, Zaldivar J, Rutter WJ, Valenzuela P (1979) Isolation of yeast tRNA Leu-genes. J Biol Chem 254:12306–12309

    Google Scholar 

  • Wawronsek EF, Hansen JN (1983) Structure and organization of a cluster of six tRNA genes in the spacer between tandem ribosomal RNA gene sets in Bacillus subtilis. J Biol Chem 258:291–298

    Google Scholar 

  • Williamson SE, Doolittle WF (1983) Genes for tRNAIle and tRNAAla in the spacer between the 16S and 23S rRNA genes of a blue-green alga: strong homology to chloroplast tRNA genes and tRNA genes of the E. coli rrnD gene cluster. Nucl Acids Res 11:223–235

    Google Scholar 

  • Yamada Y, Ohki M, Ishikura H (1983) The nucleotide sequence of B. subtilis tRNA genes. Nucl Acids Res 11:3037–3045

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by K. Isono

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wich, G., Jarsch, M. & Böck, A. Apparent operon for a 5S ribosomal RNA gene and for tRNA genes in the archaebacterium Methanococcus vannielii . Mol Gen Genet 196, 146–151 (1984). https://doi.org/10.1007/BF00334107

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00334107

Keywords

Navigation