Summary
Genes homologous to the mammalian mitochondrial NADH dehydrogenase subunit genes ND4L and ND5 were identified in the mitochondrial genome of the filamentous fungus Neurospora crassa, and the structure and expression of these genes was examined. The ND4L gene (interrupted by one intervening sequence) potentially encodes an 89 residue long hydrophobic protein that shares about 26% homology (or 41% homology if conservative amino acid substitutions are allowed) with the analogous human mitochondrial protein. The ND5 gene (which contains two introns) encodes a 715 residue polypeptide that shares 23% homology with the human analogue; a 300 amino acid long region is highly conserved (50% homology) in the two ND5 proteins. The stop codon of the ND4L gene overlaps the initiation codon of the downstream ND5 gene, and the two genes are contranscribed and probably cotranslated. A presumed mature dicistronic (ND4L plus ND5) RNA was detected. The postulated mRNA (about 3.2 kb) contains 5′ and 3′ non-coding regions of about 86 and 730 nucleotides, respectively; this species is generated from very large precursor RNAs by a complex processing pathway. The ND4L and ND5 introns are all stable after their excision from the precursor species.
Similar content being viewed by others
Abbreviations
- bp:
-
base pairs
- rRNA:
-
ribosomal RNA
- ND:
-
NADH dehydrogenase
- URF:
-
unidentified reading frame
- kDal:
-
kilodaltons; a.a., amino acid
References
Alwine JC, Kemp DJ, Stark GR (1977) Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxy-methyl-paper and hybridization with DNA probes. Proc Natl Acad Sci USA 74:5350–5354
Anderson S, Bankier AT, Barrell BG, de Bruijn MHL, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young IG (1981) Sequence and organization of the human mitochondrial genome. Nature 290:457–465
Anderson S, de Bruijn MHL, Coulson AR, Eperon IC, Sanger F, Young IG (1982) Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome. J Mol Biol 156:683–717
Bibb MJ, Van Etten RA, Wright CT, Walberg MW, Clayton DA (1981) Sequence and gene organization of mouse mitochondrial DNA. Cell 26:167–180
Bonitz, SG, Coruzzi G, Thalenfeld BE, Tzagoloff A, Macino G (1980) Assembly of the mitochondrial membrane system. Structure and nucleotide sequence of the gene coding for subunit 1 of yeast cytochrome oxidase. J Biol Chem 255:11927–11941
Breitenberger CA, RajBhandary UL (1985) Some highlights of mitochondrial research based on analyses of Neurospora crassa mitochondrial DNA. Trends Biochem Sci 10:478–483
Breitenberger CA, Browning KS, Alzner-DeWeerd B, RajBhandary UL (1985) RNA processing in Neurospora crassa mitochondria: use of transfer RNA sequences as signals. EMBOJ 4:185–195
Brown TA, Waring RB, Scazzocchio C, Davies RW (1985) The Aspergillus nidulans mitochondrial genome. Curr Genet 9:113–117
Burger G, Helmer Citterich M, Nelson MA, Werner S, Macino G (1985) RNA processing in Neurospora crassa mitochondria: transfer RNAs punctuate a large precursor transcript. EMBOJ 4:197–204
Burger G, Werner S (1985) The mitochondrial URF1 gene in Neurospora crassa has an intron that contains a novel type of URF. J Mol Biol 186:231–242
Carmichael GG, McMaster GK (1980) The analysis of nucleic acids in gels using glyoxal and acridine orange. Methods Enzymol 65:380–391
Chomyn, A, Mariottini P, Cleeter MWJ, Rangan CI, Matsuno-Yagi A, Hatefi Y, Doolittle RF, Attardi G (1985) Six unidentified reading frames of human mitochondrial DNA encode components of the respiratory-chain NADH dehydrogenase. Nature 314:592–597
Clary DO, Wahleithner JA, Wolstenholme DR (1984) Sequence and arrangement of the genes for cytochrome b, URF1, URF4L, URF4, URF5, URF6 and five tRNAs in Drosophila mitochondrial DNA. Nucleic Acids Res 12:3747–3762
Collins RA, Lambowitz AM (1983) Structural variations and optional introns in the mitochondrial DNAs of Neurospora strains isolated from nature. Plasmid 9:53–70
de la Cruz VF, Neckelmann N, Simpson L (1984) Sequences of six genes and several open reading frames in the kinetoplast maxicircle DNA of Leishmania tarentolae. J Biol Chem 259:15136–15147
de Vries H, de Jonge JC, van't Sant P, Agsteribbe E, Arnberg A (1981) A “stopper” mutant of Neurospora crassa containing two populations of aberrant mitochondrial DNA. Curr Genet 3:205–211
de Vries H, de Jonge JC, Schrage C (1985) The Neurospora mitochondrial stopper mutant, [E35], lacks two proteins genes indispensable for the formation of complexes I, III and IV. In: Quagliarello E, Slater EC, Palmieri F, Saccone C, Kroon AM (eds) Achievements and perspectives of mitochondrial research, vol. II: Biogenesis. Elsevier Science Publishers, Amsterdam, New York, Oxford, pp 285–292
de Vries H, Alzner-DeWeerd B, Breitenberger CA, Chang DD, de Jonge JC, RajBhandary UL (1986) The E35 stopper mutant of Neurospora crassa: precise localization of deletion endpoints in mitochondrial DNA and evidence that the deleted DNA codes for a subunit of NADH dehydrogenase. EMBO J 5:779–786
Frank R, Muller D, Wolff C (1981) Indentification and suppression of secondary structures formed from deoxy-oligonucleotides during electrophoresis in denaturing, polyacrylamide gels. Nucleic Acids Res 9:4967–4979
Helmer Citterich M, Morelli G, Macino G (1983) Nucleotide sequence and intron structure of the apocytochrome b gene of Neurospora crassa mitochondria. EMBO J 2:1235–1242
Hensgens LAM, Brakenhoff J, De Vries BF, Sloof P, Tromp MC, Van Boom JH, Benne R (1984) The sequence of the gene for cytochrome c oxidase subunit I, a frameshift containing gene for cytrochrome c oxidase subunit II and seven unassigned reading frames in Try[anosoma brucei mitochondrial maxi-circle DNA. Nucleic Acids Res 12:7327–7344
Ise W, Haiker H, Weiss H (1985) Mitochondrial translation of subunits of the rotenone-sensitive NADH: ubiquinone reductase in Neurospora crassa. EMBOJ 4:2075–2080
Kinnaird JH, Fincham JRS (1983) The complete nucleotide sequence of the Neurospora crassa am (NADP-specific glutamate dehydrogenase) gene. Gene 26:253–260
Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105–132
Macino G, Morelli G (1983) Cytochrome oxidase subunit 2 gene in Neurospora crassa mitochondria. J Biol Chem 258:13230–13235
Maxam AM, Gilbert W (1980) Sequencing end-labelled DNA with base-specific chemical cleavages. Methods Enzymol 65:499–560
Nelson MA, Macino G (1985) Gene organization and expression in Neurospora crassa mitochondria. In: Quagliariello E, Slater EC, Palmieri F, Saccone C, Kroon AM (eds) Achievements and perspectives in mitochondrial research, vol. II: Biogenesis. Elsevier Science Publishers, Amsterdam, New York, Oxford, pp 293–304
Nelson MA, Macino G (1987) Three class I intron in the ND4L/ND5 transcriptional unit of Neurospora crassa mitochondria. Mol Gen Genet 206:318–325
Ojala D, Montoya J, Attardi G (1981) tRNA punctuation model of RNA processing in human mitochondria. Nature 290:470–474
Roe BA, Ma D-P, Wilson RK, Wong JFH (1985) The complete nucleotide sequence of the Xenopus laevis mitochondrial genome. J Biol Chem 260:9759–9774
Terpstra P, Holtrop M, Kroon AM (1977) A complete cleavage map of Neurospora crassa mtDNA obtained with endonucleases EcoRI and BamHI. Biochim Biophys Acta 475:571–588
Vahrenholz C, Pratje E, Michaelis G, Dujon B (1985) Mitochondrial DNA of Chlamydomonas reinhardtii: sequence and arrangement of URF5 and the gene for cytochrome oxidase subunit I. Mol Gen Genet 201:213–224
Woudt LP, Pastink A, Kempers-Veeustra AE, Jansen AEM, Mager WH, Planta RJ (1983) The genes coding for histone H3 and H4 in Neurospora crassa are unique and contain intervening sequences. Nucleic Acids Res 11: 5347–5360
Yin S, Heckman JE, RajBhandary UL (1981) Highly-conserved GC-rich palindromic DNA sequences flank tRNA genes in Neurospora crassa mitochondria. Cell 26:325–332
Author information
Authors and Affiliations
Additional information
Communicated by R. J. Herrmann
Rights and permissions
About this article
Cite this article
Nelson, M.A., Macino, G. Structure and expression of the overlapping ND4L and ND5 genes of Neurospora crassa mitochondria. Mol Gen Genet 206, 307–317 (1987). https://doi.org/10.1007/BF00333589
Received:
Issue Date:
DOI: https://doi.org/10.1007/BF00333589