Skip to main content
Log in

Comparison of chloroplast DNAs by specific fragmentation with EcoRI endonuclease

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

A technique has been developed whereby chloroplast DNA can be digested with EcoRI endonuclease without prior isolation of the DNA from the organelle. The specific fragmentation patterns produced show that chloroplast DNAs from different families or genera of plants have few if any bands in common, and it is not until comparisons are made between species of the same genus that similarities become apparent. The number of bands in common between species varies considerably from genus to genus and the degree of similarity of chloroplast DNAs may be correlated with how closely related the species are as judged by their ability to form viable hybrids.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Bottomley, W., Spencer, D., Whitfeld, P.R.: Protein synthesis in isolated spinach chloroplasts: Comparison of light-driven and ATP-driven synthesis. Arch. Biochem. Biophys. 164, 106–117 (1974)

    Google Scholar 

  • Burbidge, N.T.: The Australian species of Nicotiana L. (Solanaceae). Austral. J. Bot. 8, 342–380 (1960)

    Google Scholar 

  • Deakin, J.R., Bohn, G.W., Whitaker, T.W.: Interspecific hybridization in Cucumis. Economic Bot. 25, 195–211 (1971)

    Google Scholar 

  • Goodspeed, T.H.: The Genus Nicotiana. Chronica Botanica (Waltham, Mass.) (1954)

  • Hackburth, J., Troll, H.J.: Lupinen als Koernerlegumuminosen und Futterpflanzen. Handbuch Pfalanzenzüchtung 4, 1–51 (1959)

    Google Scholar 

  • Hamer, D.H., Thomas, Jr. C.A.: The cleavage of Drosophila melanogaster DNA by restriction endonucleases. Chromosoma (Berl.) 49, 243–267 (1975)

    Google Scholar 

  • Hedgpeth, J., Goodman, H.M., Boyer, H.W.: DNA nucleotide sequence restricted by the R1 endonuclease. Proc. nat. Acad. Sci. (Wash.) 69, 3448–3452 (1972)

    Google Scholar 

  • Helling, R.B., Goodman, H.W., Boyer, H.W.: Analysis of endonuclease R. EcoRI fragments of DNA from lamboid bacteriophages and other viruses by agarose-gel electrophoresis. J. Virol. 14, 1235–1244 (1974)

    Google Scholar 

  • Herrman, R.G., Bohnert, H.J., Kowallik, K.V., Schmitt, J.M.: Size, conformation and purity of chloroplast DNA of some higher plants. Biochim. biophys. Acta (Amst.) 378, 305–317 (1975)

    Google Scholar 

  • Honda, S.I., Hongladarom, T., Laties, G.G.: A new isolation medium for plant organelles. J. exp. Bot. 17, 460–472 (1966)

    Google Scholar 

  • Kirk, J.T.O.: Will the real chloroplast DNA please stand up. In: The autonomy and biogenesis of mitochondria and chloroplasts. N.K. Boardman, A.W. Linnane and R.M. Smillie, ed., p. 267–276. Amsterdam: North Holland 1971

    Google Scholar 

  • Kolodner, R., Tewari, K.K.: Molecular size and conformation of chloroplast deoxyribonucleic acid from pea leaves. J. biol. Chem. 10, 6355–6364 (1972)

    Google Scholar 

  • Landy, A., Ruedisueli, E., Robinson, L., Foeller, C., Ross, W.: Digestion of deoxyribunucleic acids from bacteriophage T7, λ and ϕ 80 h with site-specific nucleases from Haemophilus influenzae Strain Rc and Strain Rd Biochemistry 13, 2134–2142 (1974)

    Google Scholar 

  • Mowbray, S.L., Landy, A.: Generation of specific repeated fragments of eukaryotic DNA. Proc. nat. Acad. Sci. (Wash.) 71, 1920–1924 (1974)

    Google Scholar 

  • Polisky, B., Greene, P., Garfin, D.E., McCarthy, B.J., Goodman, H.M., Boyer, H.W.: Specificity of substrate recognition by the EcoRI restriction endonuclease. Proc. nat. Acad. Sci (Wash.) 72, 3310–3314 (1975)

    Google Scholar 

  • Potter, S.S., Newbold, J.E., Hutchison, C.A., Edgell, M.H. Specific cleavage analysis of mammalian mitochondrial DNA. Proc. nat. Acad. Sci. (Wash.) 72, 4496–4500 (1975)

    Google Scholar 

  • Spencer, D., Whitfeld, P.R.: Ribonucleic acid synthesizing activity of spinach chloroplasts and nuclei. Arch. Biochem. Biophys. 121, 336–343 (1967)

    Google Scholar 

  • Tarling, D.H.: Continental drift. G. Bell & Sons, London.). 1971

    Google Scholar 

  • Tewari, K.K., Wildmann, S.G.: Function of chloroplast DNA II. Studies on DNA-dependent RNA polymerase activity of tobacco chloroplasts. Biochim. biophys. Acta (Amst.) 186, 358–372 (1969)

    Google Scholar 

  • Thomas, J.R., Tewari, K.K.: Conservation of 70S ribosomal RNA genes in chloroplast DNAs. Proc. nat. Acad. Sci. (Wash.) 71, 3147–3151 (1974)

    Google Scholar 

  • Thompson, R., Hughes, S.G., Broda, P.: Plasmid identification using specific endonuclease. Molec. gen. Genet. 133, 144–149 (1974)

    Google Scholar 

  • Thuring, R.W.J., Anders, J.P.M., Borst, P.: A freeze-squeeze method for recovering long DNA from agarose gels. Anal. Biochem. 61, 213–220 (1975)

    Google Scholar 

  • Wildman, S.G., Kawashima, N., Bourque, D.P., Wong, F., Singh, S., Chan, P.H., Kwok, S.Y., Sakano, K., Kung, S.D., Thornber, J.P.: Locations of DNAs coding for various kinds of chloroplast proteins. In: The biochemistry of gene expression in higher organisms. J.K. Pollak and J.W. Lee, ed., pp. 443–456. Sydney: Australian and New Zealand Book Co, 1973

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by Ch. Auerbach

Rights and permissions

Reprints and permissions

About this article

Cite this article

Atchison, B.A., Whitfeld, P.R. & Bottomley, W. Comparison of chloroplast DNAs by specific fragmentation with EcoRI endonuclease. Molec. Gen. Genet. 148, 263–269 (1976). https://doi.org/10.1007/BF00332900

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00332900

Keywords

Navigation