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Nonsense suppression in aminoacyl-t-RNA limited cells

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Summary

A number of nonsense alleles of lacZ exhibit phenotypic suppression (as much as a sixteen-fold increase in leakiness) during partial limitation for certain aminoacyl-tRNA species in relA mutant cells. Each responsive allele has its individual pattern of response to limitation for one or more amino acids or aminoacyl-tRNA's. The phenotypic suppression occurs only during limitation, and ceases once limitation is reversed. Suppression is much reduced by the presence of the relA+ allele or an allele of rpsL which restricts ribosomal ambiguity. In one case, the suppressed product has been identified by radioimmune assay and gel electrophoresis, and is a full-length lacZ protomer. Mechanisms are discussed whereby aberrations of translation at codons calling for an aminoacyl-tRNA species in short supply might lead to readthrough of a nearby nonsense codon.

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References

  • Atkins JF, Gesteland RF, Reid BR, Anderson CW (1979) Normal tRNAs promote ribosomal frameshifting. Cell 18:1119–1131

    Google Scholar 

  • Barnett L, Brenner S, Crick FHC, Shulmann RG, Watts-Tobin RJ (1967) Phase-shift and other mutants in the first part of the rIIB cistron of Bacteriophage T4. Phil Trans Royal Soc B 252:487–560

    Google Scholar 

  • Bittner M, Kupferer P, Morris CF (1980) Electrophoretic transfer of proteins and nucleic acids from slab gels to diazobenzyloxymethyl cellulose or nitrocellulose sheets. Anal Biochem 102:459–471

    Google Scholar 

  • Carter T, Newton A (1971) New polarity suppressors in Escherichia coli: Suppression and messenger RNA stability. Proc Natl Acad Sci USA 68:2962–2966

    Google Scholar 

  • Edelmann P, Gallant J (1977) Mistranslation in E. coli. Cell 10:131–137

    Google Scholar 

  • Erlich HA, Cohen SN, McDevitt HO (1978) A sensitive radioimmunoassay for detecting products translated from cloned DNA fragments. Cell 13:681–689

    Google Scholar 

  • Erlich HA, Levinson JR, Cohen SN, McDevitt HO (1979) Filter affinity transfer. A new technique for the in situ identification of proteins in gels. J Biol Chem 254:12240–12247

    Google Scholar 

  • Fiil NP, Willumsen BM, Friesen JD, von Meyenburg K (1977) Interaction of alleles of the relA, relC and sopT genes in Escherichia coli: Analysis of the interconversion of GTP, ppGpp and pppGpp. Mol Gen Genet 150:87–101

    Google Scholar 

  • Foley D, Dennis P, Gallant J (1981) Mechanism of the rel defect in Beta-galactosidase synthesis. J Bacteriol 145:641–643

    Google Scholar 

  • Fournier MJ, Peterkofsky A (1975) Formation of chromatographically unique species of transfer ribonucleic acid during amino acid starvation of relaxed-control Escherichia coli. J Bacteriol 122:538–548

    Google Scholar 

  • Fowler AV, Zabin I (1978) Amino acid sequence of β-galactosidase. J Biol Chem 253:5521–5525

    Google Scholar 

  • Gallant J (1979) Stringent control in E. coli. Annu Rev Genet 13:393–415

    Google Scholar 

  • Gallant J, Foley D (1980) On the causes and prevention of mistranslation. In: Chambliss G, Craven GR, Davies J, Davis K, Kahan L, Nomura M (eds) Ribosomes, structure, function and genetics. University Park Press. Baltimore, pp 615–638

    Google Scholar 

  • Gorini L (1974) Streptomycin and misreading of the genetic code. In: Nomura M, Tissieres A, Lengyel P (eds) Ribosome, Cold Spring Harbor Laboratory, New York, pp 791–803

    Google Scholar 

  • Hall B, Gallant J (1972) Defective translation in RC cells. Nature New Biol 237:121–135

    Google Scholar 

  • Harley CB, Pollard JW, Chamberlain JW, Stanners CP, Goldstein S (1980) Protein synthetic errors do not increase during aging of cultured human fibroblasts. PNAS 77:1885–1889

    Google Scholar 

  • Inokuchi H, Yamao F, Sankano H, Ozeki H (1979) Identification of transfer RNA suppressors in Escherichia coli. I. Amber suppressor 5μ2, and anticodon mutan of tRNA aln2 . J Mol Biol 132:649–662

    Google Scholar 

  • Kitchingman GR, Fournier MJ (1976) In vivo maturation of an undermodified Escherichia coli leucine transfer RNA. Biochem Biophys Res Commun 73:314–322

    Google Scholar 

  • Kitchingman GR, Webb E, Fournier MJ (1976) Unique phenylalanine transfer ribonucleic acids in relaxed control Escherichia coli: Genetic origin and some functional properties. Biochemistry 15:1848–1857

    Google Scholar 

  • Kitchingman GR, Fournier MJ (1977) Modification-deficient transfer ribonucleic acids from relaxed control Escherichia coli: Structure of the major unmodified phenylalanine and leucine transfer RNAs produced during leucine starvation. Biochemistry 16:2213–2220

    Google Scholar 

  • Kurland CG (1980) On the accuracy of elongation. In: Chambliss G, Craven GR, Davies J, Davies K, Kahan L, Nomura M (eds) Ribosomes: Structure, function, and genetics. University Park Press, Baltimore

    Google Scholar 

  • Kurland CG, Gallant J (1982) The secret life of the ribosome. In: Galas D (ed) Accuracy in biology. Marcel Dekker, New York, in press

    Google Scholar 

  • Littauer UZ, Inouye H (1973) Regulation of tRNA. Annu Rev Biochem 42:439–470

    Google Scholar 

  • Lowry OH, Rosenbrough HJ, Farr AL, Randall RJ (1951) Protein synthesis measurement with the Folin phenol reagent. J Biol Chem 191:265–275

    Google Scholar 

  • Mann MB, Huang PC (1973) Behaviour of chloramphenicol-induced phenylalanine transfer ribonucleic acid during recovery from chloramphenicol treatment in Escherichia coli. Biochemistry 12:5289–5294

    Google Scholar 

  • Napoli C, Gold L, Singer BS (1981) Translational reinitiation in the RIIB cistron of bacteriophage T4. J Mol Biol 149:433–450

    Google Scholar 

  • Newton WA, Beckwith JR, Zipser D, Brenner S (1965) Nonsense mutants and polarity in the lac operon of Escherichia coli. J Mol Biol 14:290–296

    Google Scholar 

  • Nishimura S (1979) Modified nucleosides in tRNA. In: Schimmel PR, Soell D, Abelson JN (eds) Transfer RNA, structure, properties and recognition. Cold Spring Harbor Laboratory, New York, pp 59–79

    Google Scholar 

  • Norkin LC (1970) Marker-specific effects in genetic recombination. J Mol Biol 51:633–655

    Google Scholar 

  • O'Farrell P (1978) The suppression of defective translation by ppGpp and its role in the stringent response. Cell 14:545–557

    Google Scholar 

  • Parker J, Pollard JW, Friesen JD, Stanners CP (1978) Stuttering: High-level mistranslation in animal and bacterial cells. PNAS 75:1091–1095

    Google Scholar 

  • Parker J, Fiesen JD (1980) “Two out of three” codon reading leading to mistranslation in vivo. Mol Gen Genet 177:439–445

    Google Scholar 

  • Parker J, Johnson TC, Borgia PT (1980) Mistranslation in cells infected with the bacteriophage MS2: Direct evidence of Lys for Asn substitution. Mol Gen Genet 180:275–281

    Google Scholar 

  • Primakoff P (1981) In vivo role of the relA+ gene in regulation of the lac operon. J Bacteriol 145:410–416

    Google Scholar 

  • Suzuki T, Garen A (1969) Framents of alkaline phosphatase from nonsense mutants. I. Isolation and characterization of fragments from amber and ochre mutants. J Mol Biol 45:549–566

    Google Scholar 

  • Wagner EGH, Kurland CG (1980) Translational accuracy enhanced in vitro by (p)ppGpp. Mol Gen Genet 180:139–145

    Google Scholar 

  • Waters LC, Shugart L, Yang W, Best AN (1973) Some physical and biological properties of 4-thiouridine- and dihydrouridine-deficient tRNA from chloramphenicol-treated Escherichia coli. Arch Biochem Biophys 156:780–793

    Google Scholar 

  • Zabin I, Fowler AV, Beckwith JR (1978) Position of the mutation in beta-galactosidase ochre mutant U118. J Bacteriol 133:437–438

    Google Scholar 

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Communicated by O. Siddiqi

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Gallant, J., Erlich, H., Weiss, R. et al. Nonsense suppression in aminoacyl-t-RNA limited cells. Mol Gen Genet 186, 221–227 (1982). https://doi.org/10.1007/BF00331853

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  • DOI: https://doi.org/10.1007/BF00331853

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