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Treatment with sodium butyrate inhibits the complete condensation of interphase chromatin

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Abstract

The effects of histone hyperacetylation on chromatin fiber structure were studied using direct observations with the electron microscope. Histone hyperacetylation was induced in HeLa cells by treatment with sodium butyrate, and the ultrastructure of control and of acetylated chromatin fibers examined after fixation at different stages of compaction. No differences between control and acetylated chromatin were seen when the fibers were partially unfolded (10 mM NaCl, 20 mM NaCl, 50 mM NaCl), but in 100 mM NaCl, control chromatin showed further compaction to the “30 nm” fiber, while hyperacetylated chromatin failed to undergo this final compaction step. These results strongly suggest that histone acetylation causes a moderate “relaxation” rather than complete decondensation of interphase chromatin fibers. The relationship of these findings to the increased DNase I sensitivity of acetylated chromatin, and to transcription and replication, is discussed.

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References

  • Allan J, Harborne N, Rau DC, Gould H (1982) Participation of core histone “tails” in the stabilization of the chromatin solenoid. J Cell Biol 93:285–297

    Google Scholar 

  • Allis CD, Chicoine LG, Richman R, Schulman IG (1985) Deposition-related histone acetylation in micronuclei of conjugating Tetrahymena. Proc Natl Acad Sci USA 82:8048–8052

    Google Scholar 

  • Annunziato AT, Seale RL (1983) Histone deacetylation is required for the maturation of newly replicated chromatin. J Biol Chem 258:12675–12684

    Google Scholar 

  • Ausio J, van Holde KE (1986) Histone hyperacetylation: Its effects on nucleosomal conformation and stability. Biochemistry 25:1421–1428

    Google Scholar 

  • Bertrand A, Erard M, Gomez-Lira M, Bode J (1984) Influence of histone hyperacetylation on nucleosomal particles as visualized by electron microscopy. Arch Biochem Biophys 229:395–398

    Google Scholar 

  • Beyer AL, Christensen ME, Walker BW, LeStourgeon WM (1977) Identification and characterization of the packaging proteins of core 40S hnRNP particles. Cell 11:127–138

    Google Scholar 

  • Boffa LC, Grass RJ, Allfrey VG (1981) Manifold effects of sodium butyrate on nuclear function: Selective and reversible inhibition of phosphorylation of histone H1 and H2A, and impaired methylation of lysine and arginine residues in nuclear protein fractions. J Biol Chem 256:9612–9621

    Google Scholar 

  • Butler PJG, Thomas JO (1980) Changes in chromatin folding in solution. J Mol Biol 140:505–529

    Google Scholar 

  • Candido EPM, Reeves R, Davie JR (1978) Sodium butyrate inhibits histone deacetylation in cultured cells. Cell 14:104–113

    Google Scholar 

  • Chahal SS, Matthews HR, Bradbury EM (1980) Acetylation of histone H4 and its role in chromatin structure and function. Nature 287:76–79

    Google Scholar 

  • Chambers SAM, Shaw BR (1984) Levels of histone H4 deacetylation decrease dramatically during sea urchin embryonic development and correlate with cell doubling rate. J Biol Chem 259:13458–13463

    Google Scholar 

  • Christensen ME, Rattner JB, Dixon GH (1984) Hyperacetylation of histone H4 promotes chromatin decondensation prior to histone replacement by protamines during spermatogenesis in rainbow trout. Nucleic Acids Res 12:4575–4592

    Google Scholar 

  • Cotton M, Chalkley R (1985) Hyperacetylated histones facilitate chromatin assembly in vitro. Nucleic Acids Res 13:401–414

    Google Scholar 

  • Cousens LS, Alberts BM (1982) Accessibility of newly synthesized chromatin to histone acetylase. J Biol Chem 257:3945–3949

    Google Scholar 

  • Cousens LS, Gallwitz D, Alberts BM (1979) Different accessibilities in chromatin to histone acetylase. J Biol Chem 254:1716–1723

    Google Scholar 

  • D'Anna JA, Gurley LR, Tobey RA (1982) Synthesis and modulations in the chromatin content of histone H1° and H1 during G1 and S phase in Chinese Hamster cells. Biochemistry 21:3991–4001

    Google Scholar 

  • D'Anna JA, Gurley LR, Tobey RA (1983) Extent of histone modifications and H1° content during cell cycle progression in the presence of butyrate. Exp Cell Res 147:407–417

    Google Scholar 

  • Davie JR, Candido EPM (1980) DNase I sensitive chromatin is enriched in the acetylated species of histone H4. FEBS Lett 110:164–168

    Google Scholar 

  • Ferenz CR, Nelson DA (1985) N-butyrate incubation of immature chicken erythrocytes preferentially enhances the solubility of βA chromatin. Nucleic Acids Res 13:1977–1995

    Google Scholar 

  • Garel A, Axel R (1976) Selective digestion of transcriptionally active ovalbumin genes from oviduct nuclei. Proc Natl Acad Sci USA 73:3966–3970

    Google Scholar 

  • Hagopian JK, Riggs MG, Swartz LA, Ingram VM (1977) Effect of n-butyrate on DNA synthesis in chick fibroblasts and HeLa cells. Cell 12:855–860

    Google Scholar 

  • Hardison R, Chalkley R (1978) Polyacrylamide gel electrophoretic fractionation of histones. Methods Cell Biol 17:235–251

    Google Scholar 

  • Imai BS, Yau P, Baldwin JP, Ibel K, May RP, Bradbury EM (1986) Hyperacetylation of core histones does not cause unfolding of nucleosomes: Neutron scatter data accord with disc shape of the nucleosome. J Biol Chem 261:8784–8792

    Google Scholar 

  • Isenberg I (1979) Histones. Annu Rev Biochem 48:159–191

    Google Scholar 

  • Jackson V, Shires A, Tanphaichitr N, Chalkley R (1976) Modifications to histones immediately after synthesis. J Mol Biol 104:471–483

    Google Scholar 

  • Kaplan LJ, Bauer R, Morrison E, Langan TA, Fasman GD (1984) The structure of chromatin reconstituted with phosphorylated H1: Circular dichroism and thermal denaturation studies. J Biol Chem 259:8777–8787

    Google Scholar 

  • Kress H, Tönjes R, Doenecke D (1986) Butyrate-induced accumulation of a 2–3 kb polyadenylated H1° histone mRNA in HeLa cells. Nucleic Acids Res 14:7189–7197

    Google Scholar 

  • Louie AJ, Candido EPM, Dixon GH (1973) Enzymatic modifications and their possible roles in regulating the binding of basic proteins to DNA and in controlling chromosomal structure. Cold Spring Harbor Symp Quant Biol 38:803–819

    Google Scholar 

  • Mathis DJ, Oudet P, Waslyk B, Chambon P (1978) Effect of histone acetylation on structure and in vitro transcription of chromatin. Nucleic Acids Res 5:3523–3547

    Google Scholar 

  • McGhee JD, Rau DC, Charney E, Felsenfeld G (1980) Orientation of the nucleosome within the higher order structure of chromatin. Cell 22:87–96

    Google Scholar 

  • McGhee JD, Nickol JM, Felsenfeld G, Rau DC (1983a) Histone hyperacetylation has little effect on the higher order structure of chromatin. Nucleic Acids Res 11:4065–4075

    Google Scholar 

  • McGhee JD, Nickol JM, Felsenfeld G, Rau DC (1983b) Higher order structure of chromatin. Orientation of nucleosomes within the 30 nm chromatin solenoid is independent of species and spacer length. Cell 33:831–844

    Google Scholar 

  • Murcia G, Koller T (1981) The electron microscopic appearance of soluble rat liver chromatin mounted on different supports. Biol Cell 40:165–174

    Google Scholar 

  • Nelson DA, Perry WM, Chalkley R (1978) Sensitivity of regions of chromatin containing hyperacetylated histones to DNase I. Biochem Biophys Res Commun 82:356–363

    Google Scholar 

  • Nelson D, Perry ME, Chalkley R (1979) A correlation between nucleosome spacer region accessibility to DNase I and histone acetylation. Nucleic Acids Res 6:561–574

    Google Scholar 

  • Nelson D, Covault J, Chalkley R (1980) Segregation of rapidly acetylated histones into a chromatin fraction released from intact nuclei by the action of micrococcal nuclease. Nucleic Acids Res 8:1745–1763

    Google Scholar 

  • Nelson DA, Ferris RC, Zhang D-E, Ferenz CR (1986) The β-globin domain in immature chicken erythrocytes: Enhanced solubility is coincident with histone hyperacetylation. Nucleic Acids Res 14:1667–1682

    Google Scholar 

  • Panyim S, Chalkley R (1969) High resolution acrylamide gel electrophoresis of histones. Arch Biochem Biophys 130:337–346

    Google Scholar 

  • Perry M, Chalkley R (1981) The effect of histone hyperacetylation on the nuclease sensitivity and solubility of chromatin. J Biol Chem 256:3313–3318

    Google Scholar 

  • Perry M, Chalkley R (1982) Histone acetylation increases the solubility of chromatin and occurs sequentially over most of the chromatin: A novel model for the biological role of histone acetylation. J Biol Chem 257:7336–7347

    Google Scholar 

  • Perry M, Nelson D, Moore M, Chalkley R (1979) Histone deacetylation in nuclei isolated from hepatoma tissue culture cells. Inhibition by sodium butyrate. Biochim Biophys Acta 561:517–525

    Google Scholar 

  • Pesis KH, Matthews HR (1986) Histone acetylation in replication and transcription: Turnover at specific acetylation sites in histone H4 from Physarum polycephalum. Arch Biochem Biophys 251:665–673

    Google Scholar 

  • Renz M, Nehls P, Hozier J (1977) Involvement of histone H1 in the organization of the chromatin fiber. Proc Natl Acad Sci USA 74:1879–1884

    Google Scholar 

  • Riggs MG, Whittaker RG, Neuman JR, Ingram VM (1977) n-Butyrate causes histone modification in HeLa and Friend erythroleukemia cells. Nature 268:462–464

    Google Scholar 

  • Rocha E, Davie JR, van Holde KE, Weintraub H (1984) Differential salt fractionaton of active and inactive genomic domains in chicken erythrocyte. J Biol Chem 259:8558–8563

    Google Scholar 

  • Ruiz-Carillo A, Wangh LJ, Allfrey VG (1975) Processing of newly synthesized histone molecules: nascent histone H4 chains are reversibly phosphorylated and acetylated. Science 190:117–128

    Google Scholar 

  • Seale RL (1975) Assembly of DNA and protein during replication in HeLa cells. Nature 255:247–249

    Google Scholar 

  • Sealy L, Chalkley R (1978) The effect of sodium butyrate on histone modification. Cell 14:115–121

    Google Scholar 

  • Simpson RT (1978) Structure of chromatin containing extensively acetylated H3 and H4. Cell 13:691–699

    Google Scholar 

  • Strätling WH, Klingholz R (1981) Supranucleosomal structure of chromatin digestion by calcium/magnesium endonuclease proceeds via a discrete size class of particles with elevated stability. Biochemistry 20:1386–1392

    Google Scholar 

  • Strätling WH, Müller U, Zentgraf H (1978) The higher order structure of chromatin is built up of globular particles containing eight nucleosomes. Exp Cell Res 117:301–311

    Google Scholar 

  • Thoma F, Koller T, Klug A (1979) Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. J Cell Biol 83:403–427

    Google Scholar 

  • Vidali G, Boffa LC, Bradbury EM, Allfrey VG (1978) Butyrate suppression of histone deacetylation leads to accumulation of multiacetylated forms of histone H3 and H4 and increased DNase I sensitivity of the associated DNA sequences. Proc Natl Acad Sci USA 75:2239–2243

    Google Scholar 

  • Waterborg JH, Matthews HR (1984) Patterns of histone acetylation in Physarum polycephalum: H2A and H2B acetylation is functionally distinct from H3 and H4 acetylation. Eur J Biochem 142:329–335

    Google Scholar 

  • Weintraub H, Groudine M (1976) Chromosomal subunits in active genes have an altered conformation. Science 193:848–856

    Google Scholar 

  • Whitlock JP Jr, Simpson RT (1977) Localization of the sites along nucleosome DNA which interact with NH2-terminal histone regions. J Biol Chem 252:6516–6520

    Google Scholar 

  • Whitlock JP Jr, Stein AJ (1978) Folding of DNA by histones which lack their NH2-terminal regions. J Biol Chem 253:3857–3861

    Google Scholar 

  • Woodcock CLF, Frado L-LY, Green GR, Einck L (1981) Adhesion of particulate specimins to support films for electron microscopy: a model system for assessing the surface properties of support films and its application to chromatin. J Microsc 121:211–220

    Google Scholar 

  • Woodcock CLF, Frado L-LY, Rattner JB (1984) The higher order structure of chromatin: Evidence for a helical ribbon arrangement. J Cell Biol 99:45–52

    Google Scholar 

  • Worcel A, Strogatz S, Riley D (1981) Structure of chromatin and the linking number of DNA. Proc Natl Acad Sci USA 78:1461–1465

    Google Scholar 

  • Zentgraf H, Franke WW (1984) Differences of supranucleosomal organization in different kinds of chromatin: Cell type-specific globular subunits containing different numbers of nucleosomes. J Cell Biol 99:272–286

    Google Scholar 

  • Zentgraf H, Müller U, Franke WW (1980a) Reversible in vitro packing of nucleosomal filaments into globular supranucleosomal units in chromatin of whole chick erythrocyte nuclei. Eur J Cell Biol 23:171–188

    Google Scholar 

  • Zentgraf H, Müller U, Franke WW (1980b) Supranucleosomal organization of sea urchin sperm chromatin in regularly arranged 40 to 50 nm large granular subunits. Eur J Cell Biol 21:254–264

    Google Scholar 

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Annunziato, A.T., Frado, L.L.Y., Seale, R.L. et al. Treatment with sodium butyrate inhibits the complete condensation of interphase chromatin. Chromosoma 96, 132–138 (1988). https://doi.org/10.1007/BF00331045

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  • DOI: https://doi.org/10.1007/BF00331045

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