Summary
Transcription from the asnC promoter was found to proceed through the replication origin, oriC, into the gidA gene of Escherichia coli. Between 10% and 20% of asnC transcripts reached oriC in vivo. Termination sites in the intergenic region between asnC and mioC and within mioC were determined in vivo and in vitro using S1 mapping. Only about 10% of the transcripts terminated at the asnC terminator in vivo. DnaA protein dependent termination was observed close to the binding site, dnaA box, for DnaA protein. In the in vitro replication system asnC transcripts did not reach oriC, suggesting that asnC transcripts are not involved in the initiation of replication, contrary to mioC transcripts. We suggest that oriC and mioC might have been transposed during evolution into an asnC regulon.
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Altuvia S, Locker-Giladi H, Koby S, Ben-Nun O, Oppenheim AB (1987) RNase III stimulates the translation of the cIII gene of bacteriophage lambda. Proc Natl Acad Sci USA 84:6511–6515
Berk AJ, Sharp PA (1978) Structure of the Adenovirus 2 early mRNAs. Cell 14:695–711
Brosius J, Cate RL, Perlmutter PA (1982) Precise location of two promoters for the β-lactamase gene of pBR322. J Biol Chem 257:9205–9210
Buhk HJ, Messer W (1983) Replication origin region of Escherichia coli: Nucleotide sequence and functional units. Gene 24:265–279
Collins J (1979) Cell-free synthesis of proteins coding for mobilisation functions of colE1 and transposition functions of Tn3. Gene 6:29–42
de Wind N, de Jong M, Meijer M, Stuitje AR (1985) Site-directed mutagenesis of the Escherichia coli chromosome near oriC: identification and characterization of asnC, a regulatory element in Escherichia coli asparagine metabolism. Nucleic Acids Res 13:8797–8811
Deuschle U, Gentz R, Bujard H (1986) lac repressor blocks transcribing RNA polymerase and terminates transcription. Proc Natl Acad Sci USA 83:4134–4137
Dove WF, Inokuchi H, Stevens F (1971) Replication control in lambda. In: Hershey AD (ed) The bacteriophage lambda. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp 747–771
Dunn JJ, Studier FW (1983) Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements. J Mol Biol 166:477–535
Fuller RS, Kaguni JM, Kornberg A (1981) Enzymatic replication of the origin of the E. coli chromosome. Proc Natl Acad Sci USA 78:7370–7374
Fuller RS, Funnell BE, Kornberg A (1984) The dnaA protein complex with the E. coli chromosomal origin (oriC) and other sites. Cell 38:889–900
Hansen FG, Hansen EB, Atlung T (1982) The nucleotide sequence of the dnaA gene promoter and of the adjacent rpmH gene, coding for the ribosomal protein L34, of Escherichia coli. EMBO J 1:1043–1048
Helmstetter CE, Leonard AC (1987) Coordinate initiation of chromosome and minichromosome replication in Escherichia coli. J Bacteriol 169:3489–3494
Junker DE, Rokeach LA, Ganea D, Chiaramello A, Zyskind JW (1986) Transcription termination within the Escherichia coli origin of DNA replication, oriC. Mol Gen Genet 203:101–109
Kohara Y, Tohdoh N, Jiang XW, Okazaki T (1985) The distribution and properties of RNA primed initiation sites of DNA synthesis at the replication origin of Escherichia coli chromosome. Nucleic Acids Res 13:6847–6866
Kölling R, Lother H (1985) AsnC: An autogeneously regulated activator of asparagine synthetase A transcription in E. coli. J Bacteriol 164:310–315
Kölling R, Gielow A, Seufert W, Kücherer C, Messer W (1988) AsnC, a multifunctional regulator of genes located around the replication origin of Escherichia coli, oriC. Mol Gen Genet: 212:99–104
Kornberg A, Baker TA, Bertsch LL, Bramhill D, Funnell BE, Lasken RS, Maki H, Maki S, Sekimizu K, Wahle E (1986) Enzymatic studies of replication of oriC plasmids. UCLA Symp Mol Cell Biol, New Series 47:137–149
Lark KG (1972) Evidence for direct involvement of RNA in the initiation of DNA replication in E. coli 15T. J Mol Biol 64:47–60
Løbner-Olesen A, Atlung T, Rasmussen KV (1987) Stability and replication control of E. coli minichromosomes. J Bacteriol 169:2835–2842
Lother H, Messer W (1981) Promoters in the E. coli replication origin. Nature 294:376–378
Lother H, Kölling R, Kücherer C, Schauzu M (1985) Initiation of replication in Escherichia coli involves dnaA protein regulated transcription within the replication origin. EMBO J 4:555–560
Maaløe O, Kjeldgaard NO (1966) Control of macromolecular synthesis. Benjamin, New York Amsterdam
Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning. Cold Spring Harbor Laboratory Press, New York
Messer W (1972) Initiation of DNA replication in E. coli B/r. Chronology of events and transcriptional control of initiation. J Bacteriol 112:7–12
Messer W (1987) Initiation of DNA replication in Eschericherichia coli. J Bacteriol 169:3395–3399
Ogasawara N, Moriya S, Von Meyenburg K, Hansen FG, Yoshikawa H (1985) Conservation of genes and their organization in the chromosomal replication origin region of Bacillus subtilis and Escherichia coli. EMBO J 4:3345–3350
Ogawa T, Baker TA, Van der Ende A, Kornberg A (1985) Initiation of enzymatic replication at the Escherichia coli chromosome: Contributions of RNA polymerase and primase. Proc Natl Acad Sci USA 82:3562–3566
Oka A, Sugisaki H, Takanami M (1981) Nucleotide sequence of the kanamycin transposon Tn903. J Mol Biol 147:217–226
Rak B, Von Reutern M (1984) Insertion element IS5 contains a third gene. EMBO J 3:807–811
Rokeach LA, Zyskind JW (1986) RNA terminating within the Escherichia coli origin of replication: Stringent regulation and control by DnaA protein. Cell 46:763–771
Rokeach LA, Chiaramello A, Junker DE, Crain K, Nourani A, Jannatipour M, Zyskind JW (1986) Effects of DnaA protein on replication and transcription events at the Escherichia coli origin of replication. oriC. UCLA Symp Mol Cell, New Series 47:415–427
Rokeach LA, Kassavetis GA, Zyskind JW (1987) RNA polymerase pauses in vitro within the Escherichia coli origin of replication at the same sites where termination occurs in vivo. J Biol Chem 262:7264–7272
Schauzu MA, Kücherer C, Kölling R, Messer W, Lother H (1987) Transcripts within the replication origin, oriC, of Escherichia coli. Nucleic Acids Res 15:2479–2497
Schaefer C, Messer W (1988) Termination of the Escherichia coli asnc transcript. The DnaA protein/dnaA box complex blocks transcribing RNA polymerase. Gene (in press)
Stüber K (1986) Nucleic acid secondary structure prediction and display. Nucleic Acids Res 14:317–326
Stuitje AR, De Wind N, Van der Spek JC, Pors TH, Meijer M (1986) Dissection of promoter sequences involved in transriptional activation of the Escherichia coli replication origin. Nucleic Acids Res 14:2333–2344
Van der Ende A, Baker TA, Ogawa T, Kornberg A (1985) Initiation of enzymatic replication at the origin of the E. coli chromosome: Primase as the sole priming enzyme. Proc Natl Acad Sci USA 82:3954–3958
Von Meyenburg K, Hansen FG (1980) The origin of replication, oriC, of the E. coli chromosome: Genes near oriC and construction of oriC deletion mutations. ICN-UCLA Symp Mol Cell Biol 19:137–159
Von Meyenburg K, Hansen FG (1987) Regulation of chromosome replication. In: Neidhardt FC, Ingraham JL, Low KB, Magasanik B, Schaechter M, Umbarger HE (eds) Escherichia coli and Salmonella typhimurium cellular and molecular biology. ASM, Washington, DC, pp 1555–1577
Von Meyenburg K, Hansen FG, Riise E, Bergmans HE, Meijer M, Messer W (1979) Origin of replication, oriC, of the E. coli K-12 chromosome: genetic mapping and minichromosome replication. Cold Spring Harbor Symp Quant Biol 43:121–128
Wright J, Hayward R (1987) Transcriptional termination at a fully rho-independent site in E. coli is prevented by uninterrupted translation of the nascent RNA. EMBO J 6:1115–1119
Zubay G (1973) In vitro synthesis of protein in microbial systems. Annu Rev Genet 7:267–287
Zyskind JW, Deen LT, Smith DW (1977) Temporal sequence of events during the initiation process in E. coli deoxyribonucleic acid replication: Roles of the dnaA and dnaC gene products and ribonucleic acid polymerase. J Bacteriol 129:1466–1477
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Gielow, A., Kücherer, C., Kölling, R. et al. Transcription in the region of the replication origin, oriC, of Escherichia coli: Termination of asnC transcripts. Mol Gen Genet 214, 474–481 (1988). https://doi.org/10.1007/BF00330483
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DOI: https://doi.org/10.1007/BF00330483