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Gene mapping on human metaphase chromosomes by in situ hybridization with 3H, 35S, and 32P labeled probes and transmission electron microscopy

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Abstract

A method based on in situ hybridization, autoradiography and transmission electron microscopy for mapping genes on human metaphase chromosomes is presented. Successful mapping of the tandemly repeated rDNA genes and of two nucleic acid probes, N-myc and probe 3 (Kanda et al. 1983), that are amplified in a homogeneously staining region (HSR) of the neuroblastoma cell line, IMR-32 is described. By using sufficiently thin AgBr emulsions, it is possible to obtain observable grains and good resolution with probes radiolabeled with 3H, 35S, or 32P, but the former gives the best results. We observe that neither of the two probes, N-myc and probe 3, has a uniform spatial distribution along the HSR and that the distributions of the two probes differ from each other. These observations support previous studies which indicated that the formation of an HSR is a more complex process than uniform amplification of a single DNA segment to form an n-fold set of perfect tandem repeats. The present study shows that the electron microscopic method is useful for extending the results of light microscopic studies for problems where higher resolution mapping is needed.

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References

  • Evans HJ, Buckland RA, Pardue ML (1974) Location of the genes coding for 18S and 28S ribosomal RNA in the human genome. Chromosoma 48:405–426

    Google Scholar 

  • Gerhard DA, Kawasaki ES, Bancroft FC, Szabo P (1981) Localization of a unique gene by direct hybridization in situ. Proc Natl Acad Sci USA 78:3755–3759

    Google Scholar 

  • Harper ME, Barrea-Saldana HA, Saunders GF (1982) Chromosomal localization of the human placental lactogen-growth hormone gene cluster to 17q22-24. Am J Hum Genet 34:227–234

    Google Scholar 

  • Harper ME, Saunders GF (1981) Localization of single copy DNA sequences on G-banded human chromosomes by in situ hybridization. Chromosoma 83:431–439

    Google Scholar 

  • Henderson AS, Warburton D, Atwood KC (1972) Location of rDNA in the human chromosome complement. Proc Natl Acad Sci USA 69:3394–3398

    Google Scholar 

  • Hutchison NJ, Langer-Safer PR, Ward DC, Hamkalo BA (1982) In situ hybridization at the electron microscope level: hybrid detection by autoradiography and colloidal gold. J Cell Biol 95:609–618

    Google Scholar 

  • Kanda N, Schreck R, Alt F, Bruns G, Baltimore D, Latt S (1983) Isolation of amplified DNA sequences from IMR-32 human neuroblastoma cells: Facilitation by fluroescence-activated flow sorting of metaphase chromosomes. Proc Natl Acad Sci USA 80:4069–4073

    Google Scholar 

  • Kohl NE, Kanda N, Schreck RR, Bruns G, Latt SA, Gilbert F, Alt FW (1983) Transposition and amplification of oncogenerelated sequences in human neuroblastomas. Cell 35:359–367

    Google Scholar 

  • Kress H, Meyerowitz EM, Davidson N (1985) High resolution mapping of in situ hybridized biotinylated DNA to surface spread Drosophila polytene chromosomes. Chromosoma 93:113–122

    Google Scholar 

  • Mottes M, Tsai Lai S-A, Montoya J, Attardi G (1984) A new type of EcoRI polymorphism of the human ribosomal DNA repeating unit revealed by analysis of cloned DNA fragments, Gene 27:109–113

    Google Scholar 

  • Salpeter MM, Bachmann L (1964) Autoradiography with the electron microscope: A procedure for improving resolution, sensitivity, and contrast. J Cell Biol 22:469–475

    Google Scholar 

  • Schimke RT (1982) (ed) Gene amplification. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

  • Schwab M, Alitalo K, Klempnauer K-H, Varmus HE, Bishop JM, Gilbert F, Brodeur G, Goldstein M, Trent J (1983) Amplified DNA with limited homology to myc cellular oncogene is shared by human neuroblastoma cell lines and a neuroblastoma tumour. Nature 305:245–248

    Google Scholar 

  • Seabright M (1972) The use of proteolytic enzymes for the mapping of structural rearrangements in the chromosomes of man. Chromosoma 36:204–210

    Google Scholar 

  • Shiloh Y, Shipley J, Brodeur GM, Bruns G, Korf B, Donlon T, Schreck RR, Seeger R, Saki K, Latt SA (1985) Differential amplification, assembly, and relocation of multiple DNA sequences in human neuroblastomas and neuroblastoma cell lines. Proc Natl Acad Sci USA 82:3761–3765

    Google Scholar 

  • Tumilowica J, Nichols WW, Cholon JJ, Greene AE (1970) Definition of a continuous human cell line derived from neuroblastoma. Cancer Res 30:2110–2118

    Google Scholar 

  • Wu M, Davidson N (1981) Transmission electron microscopic method for gene mapping on polytene chromosomes by in situ hybridization. Proc Natl Acad Sci USA 78:7059–7063

    Google Scholar 

  • Xu X, Wu M (1983) Electron microscopy of G-banded human mitotic chromosomes. Chromosoma 88:237–240

    Google Scholar 

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Li, Cb., Wu, M., Margitich, I.S. et al. Gene mapping on human metaphase chromosomes by in situ hybridization with 3H, 35S, and 32P labeled probes and transmission electron microscopy. Chromosoma 93, 305–312 (1986). https://doi.org/10.1007/BF00327588

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  • DOI: https://doi.org/10.1007/BF00327588

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