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A hotspot for transition mutations in the rIIB gene of bacteriophage T4

I. The extent of the hotspot

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Summary

We have previously demonstrated that the sequence 5′TGGCAA 3′ located at codons 32–33 of the rIIB gene of bacteriophage T4 is a hotspot for transition mutations (Nelson et al. 1981). Here I report the properties of the same TGGCAA sequence introduced into the gene at codons 11–12. The sequence is highly mutable in both locations, suggesting that its high mutability is due to features of the TGGCAA itself and is not dependent on the immediate juxtaposition of additional external sequences. Within this sequence, at either location, only the transition at the central G:C pair frequently arises spontaneously or by 2-aminopurine or ethylmethane sulfonate mutagenesis. However, the 3′ G:C pair, in addition, is highly mutable after nitrous acid or hydroxylamine treatment. This suggests that, within the TGGCAA sequence, there are two hotspots which are targeted by different mutagens.

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References

  • Barnett L, Brenner S, Crick FHC, Shulman RG, Watts-Tobin RJ (1967) Phase-shift and other mutants in the first part of the rIIB cistron of bacteriophage T4. Phil Trans Roy Soc London (B) 252:487–560

    Google Scholar 

  • Benzer S (1959) On the topology of the genetic fine structure. Genetics 45:1607–1620

    Google Scholar 

  • Benzer S (1961) On the topography of the genetic fine structure. Proc Natl Acad Sci USA 47:403–415

    Google Scholar 

  • Benzer S, Champe SP (1961) Ambivalent rII mutants of phage T4. Proc Natl Acad Sci USA 47:1025–1038

    Google Scholar 

  • Brenner S, Barnett L, Crick FHC, Orgel A (1961) The theory of mutagenesis. J Mol Biol 3:121–124

    Google Scholar 

  • Champe SP, Benzer S (1962) An active cistron fragment. J Mol Biol 4:288–292

    Google Scholar 

  • Coulondre C, Miller JH (1977) Genetic studies of the lac repressor. III. Additional correlation of mutational sites with specific amino acid residues. J Mol Biol 117:525–575

    Google Scholar 

  • Coulondre C, Miller JH, Farabaugh PJ, Gilbert W (1978) Molecular basis of base substitution hotspots in Escherichia coli. Nature 274:775–780

    Google Scholar 

  • Cunningham RP, Berger H (1977) Mutations affecting genetic recombination in bacteriophage T4D. I. Pathway analysis. Virology 80:67–82

    Google Scholar 

  • Doermann AH, Hill MB (1953) Genetic structure of bacteriophage T4 as described by recombination studies of factors influencing plaque morphology. Genetics 38:79–90

    Google Scholar 

  • Drake JW (1970) The Molecular Basis of Mutation, Holden-Day, San Francisco

    Google Scholar 

  • Freese E (1959) The difference between spontaneous and baseanalogue induced mutations of phage T4. Proc Natl Acad Sci USA 45:622–633

    Google Scholar 

  • Mathews CK, Allen JR (1983) DNA precursor biosynthesis. In The Bacteriophage T4, (Mathews CK, Berget PB, Mosig G, Kutter E, eds), American Society of Microbiology, Washington, DC, pp. 59–70

    Google Scholar 

  • Miller JH, Coulondre C, Farabaugh PJ (1978) Correlation of nonsense sites in the lacI gene with specific codons in the nucleotide sequence. Nature 274:770–775

    Google Scholar 

  • Nossal NG, Alberts BM (1983) Mechanism of DNA replication catalyzed by purified T4 replication proteins. In The Bacteriophage T4, (Mathews CK, Berget PB, Mosig G, Kutter E, eds), American Society of Microbiology, Washington, DC, pp. 71–81

    Google Scholar 

  • Nelson MA, Ericson M, Gold L, Pulitzer JF (1982) The isolation and characterization of TabR bacteria: hosts that restrict bacteriophage T4 rII mutants. Mol Gen Genet 188:60–68

    Google Scholar 

  • Nelson MA, Singer BS, Gold L, Pribnow D (1981) Mutations that detoxify an aberrant T4 membrane protein. J Mol Biol 149:377–403

    Google Scholar 

  • Pribnow D, Sigurdson DC, Gold L, Singer BS, Napoli C, Brosius J, Dull TJ, Noller HF (1981) rII cistrons of bacteriophage T4: DNA sequence around the intercistronic divide and positions of genetic landmarks. J Mol Biol 149:337–376

    Google Scholar 

  • Revel HR (1983) DNA modification: Glucosylation. In The Bacteriophage T4, (Mathews CK, Berget PB, Mosig G, Kutter E, eds), American Society of Microbiology, Washington, DC, pp. 156–165

    Google Scholar 

  • Singer BS, Gold L (1976) A mutation that confers temperature sensitivity on the translation of rIIB in bacteriophage T4. J Mol Biol 103:627–646

    Google Scholar 

  • Singer BS, Gold L, Gauss P, Doherty DH (1982) Determination of the amount of homology required for recombination in bacteriophage T4. Cell 31:25–33

    Google Scholar 

  • Singer BS, Gold L, Shinedling ST, Colkitt M, Hunter LR, Pribnow D, Nelson MA (1981) Analysis in vivo of translational mutants of the rIIB cistron of bacteriophage T4. J Mol Biol 149:405–432

    Google Scholar 

  • Smith AJH (1980) DNA sequence analysis by primed synthesis. Methods in Enzymology 65:560–581

    Google Scholar 

  • Streisinger G, Okada Y, Emrich J, Newton J, Tsugita A, Terzaghi E, Inouye M (1966) Frameshift mutations and the genetic code. Cold Spring Harbor Symp Quant Biol 31:77–84

    Google Scholar 

  • Tessman I (1965) Genetic ultrafine structure in the T4rII region. Genetics 51:63–75

    Google Scholar 

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Communicated by G.R. Smith

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Singer, B.S. A hotspot for transition mutations in the rIIB gene of bacteriophage T4. Molec. Gen. Genet. 193, 104–109 (1984). https://doi.org/10.1007/BF00327422

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  • DOI: https://doi.org/10.1007/BF00327422

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