Summary
DNA clones that encode the group-II subunits of soybean glycinin were identified and compared with clones for group-I subunits. The group-I clones hybridize weakly to those from group-II at low stringency, but fail to hybridize with them at moderate or high stringency. The genes for the group-II subunits are contained in 13 and 9 kb EcoRI fragments of genomic DNA in cultivar CX635-1-1-1. These fragments contain genes for subunits A5A4B3 and A3B4, respectively. The larger size of mature group-II subunits compared with group-I subunits is correlated with a larger sized mRNA. However, the gross arrangement of introns and exons within the group-II coding regions appears to be the same as for the genes which encode group-I subunits. Messenger RNA for both groups of glycinin subunits appear in the seed at the same developmental interval, and their appearance lags slightly behind that of mRNAs for the a/a′ subunits of β-conglycinin. These data indicate that the glycinin gene family is more complex than previously thought.
Similar content being viewed by others
Abbreviations
- bp:
-
base pairs
- kb:
-
kilobase pairs
- SDS:
-
sodium dodecyl sulfate
References
Badley RA, Atkinson D, Hauser H, Odani D, Green JP, Stubbs JM (1975) The structure, physical and chemical properties of the soy bean protein glycinin. Biochim Biophys Acta 412:214–228
Bailey JM, Davidson N (1976) Methylmercury as a reversible denaturing agent for agarose gel electrophoresis. Anal Biochem 70:75–85
Baulcombe D, Verma DPS (1978) Preparation of a complementary DNA for leghaemoglobin and direct demonstration that leghaemoglobin is encoded by the soybean genome. Nucleic Acids Res 5:4141–4153
Benton WD, Davis RW (1977) Screening λgt recombinant clones by hybridization to single plaques in situ. Science 196:180–182
Berry-Lowe SL, McKnight TD, Shah DM, Meagher RB (1982) The nucleotide sequence, expression, and evolution of one member of a multigene family encoding the small subunit of ribulose-1,5-bisphosphate carboxylase in soybean. J Mol Appl Genet 1:483–498
Burr B, Burr FA, St John TP, Thomas M, Davis RW (1982) Zein storage protein gene family of maize. J Mol Biol 154:33–49
Casey J, Davidson N (1977) Rates of formation and thermal stabilities of RNA:DNA and DNA:DNA duplexes at high concentrations of formamide. Nucleic Acids Res 4:1539–1552
Catsimpoolas N, Rogers DA, Circle SJ, Meyer EW (1967) Purification and structural studies of the 11S component of soybean proteins. Cereal Chem 44:631–637
Chase JW, Richardson CC (1974) Exonuclease VII of Escherichia coli. J Biol Chem 249:4545–4552
Croy RRD, Lycett GW, Gatehouse JA, Yarwood JN, Boulter D (1982) Cloning and analysis of cDNAs encoding plant storage protein precursors. Nature 295:76–79
Densmuir P, Smith SM, Bedbrook J (1983) The major chlorophyll a/b binding protein of petunia is composed of several polypeptides encoded by a number of distinct nuclear genes. J Mol Appl Genet 2:285–300
Fischer RL, Goldberg RB (1982) Structure and flanking regions of soybean seed protein genes. Cell 29: 651–660
Goldberg RB, Hoschek G, Ditta GS, Breidenbach RW (1981) Developmental regulation of cloned superabundant embryo mRNAs in soybean. Dev Biol 83:218–231
Grunstein M, Hogness D (1975) Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene. Proc Natl Acad Sci USA 72:3961–3965
Gubler U, Hoffman B (1983) A simple and very efficient method for generating cDNA libraries. Gene 25: 263–269
Hall TC, Ma Y, Buchbinder BU, Pyne JW, Dun SM, Bliss FA (1978) Messenger RNA for Gl protein of French bean seeds: cell-free translation and product characterization. Proc Natl Acad Sci USA 75: 3196–3200
Heyn RF, Hermans AK, Schilperoort RA (1974) Rapid and efficient isolation of highly polymerized plant DNA. Plant Sci Lett 2:73–78
Kitamura K, Davies CS, Nielsen NC (1984) Inheritance of alleles for Cgy 1 and Gy 4 storage protein genes in soybean. Theor Appl Genet 68:253–257
Kitamura K, Takagi T, Shibasaki K (1976) Subunit structure of soybean 11S globulin. Agric Biol Chem 40:1837–1844
Lycett GW, Croy RRD, Shirsat AH, Boulter D (1984) The complete nucleotide sequence of a legumin gene from pea (Pisum sativum L.) Nucleic Acids Res 12:4493–4506
Mandel M, Higa A (1970) Calcium dependent bacteriophage DNA infection. J Mol Biol 53:159–162
Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Marco YA, Thanh VH, Turner NE, Scallon BJ, Nielsen NC (1984) Cloning and structural analysis of DNA encoding an A2B1a subunit of glycinin. J Biol Chem 259:13436–13441
Maxam AM, Gilbert W (1980) Sequencing end-labelled DNA with base-specific chemical cleavages. In: Grossman L, Moldare K (eds) Methods in enzymology, vol 65. Academic Press, New York, pp 499–560
McDonell MW, Simon MN, Studer FW (1977) Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels. J Mol Biol 110:119–146
Meinke DW, Chen J, Beachy RN (1981) Expression of storage-protein genes during soybean seed development. Planta 153:130–139
Miflin BJ, Rahman S, Kreis M, Forde BG, Blanco L, Shewry PR (1983) The hordeins of barley: developmentally and nutritionally regulated multigene families of storage proteins. In: Ciferri O, Dure LS (eds) Structure and function of plant genomes. Plenum Press, New York, pp 21–90
Moreira MA, Hermodson MA, Larkins BA, Nielsen NC (1979) Partial characterization of the acidic and basic polypeptides of glycinin. J Biol Chem 254:9921–9926
Nielsen NC (1984) The chemistry of legume storage proteins. Philos Trans R Soc London, Ser B 304:287–296
Pedersen K, Devereux J, Wilson DR, Sheldon E, Larkins BA (1982) Cloning and sequence analysis reveal structural variation among related zein genes in maize. Cell 29:1015–1026
Rasmussen SK, Hopp HE, Brandt A (1983) Nucleotide sequences of cDNA clones for Bl hordein polypeptides. Carlsberg Res Commun 48:187–199
Schuler MA, Ladin BF, Pollaco JC, Freyer G, Beachy RN (1982) Structural sequences are conserved in the genes coding for the α,α′ and β-subunits of the soybean 7S seed storage protein. Nucleic Acids Res 10:8245–8261
Southern E (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98: 503–517
Staswick PE, Hermodson MA, Nielsen NC (1981) Identification of the acidic and basic subunit complexes of glycinin. J Biol Chem 256:8752–8755
Staswick PE, Nielsen NC (1983) Characterization of a soybean cultivar lacking certain glycinin subunits. Arch Biochem Biophys 223:1–8
Staswick PE, Hermodson MA, Nielsen NC (1984) Identification of the cystines which link the acidic and basic components of the glycinin subunits. J Biol Chem 259:13431–13435
Tumer N, Thanh VH, Nielsen NC (1981) Purification and characterization of mRNA from soybean seeds. J Biol Chem 256:8756–8760
Tumer N, Richter JD, Nielsen NC (1982) Structural characterization of the glycinin precursors. J Biol Chem 257:4016–4018
Vieira J, Messing J (1982) The pUC plasmids, an M13mp7- derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19:259–268
Weislander L (1979) A simple method to recover intact high molecular weight RNA and DNA after electrophoretic separation in low gelling temperature agarose gels. Anal Biochem 98:305–309
Author information
Authors and Affiliations
Additional information
Communicated by D. von Wettstein
Cooperative research between USDA/ARS and the Indiana Agric. Expt. Station. This work was supported in part by grants from the USDA Competitive Grants Program and the American Soybean Association Research Foundation. This is Journal Paper No. 10,078 from the Purdue Agricultural Experiment Station
Rights and permissions
About this article
Cite this article
Scallon, B., Thanh, V.H., Floener, L.A. et al. Identification and characterization of DNA clones encoding group-II glycinin subunits. Theoret. Appl. Genetics 70, 510–519 (1985). https://doi.org/10.1007/BF00305984
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/BF00305984