Abstract
Analysis of the upstream activation sequence (UAS) of the yeast phosphoglycerate kinase gene (PGK) has demonstrated that a number of sequence elements are involved in its activity and two of these sequences are bound by the multifunctional factors Rap1p and Abftp. In this report we show by in vivo footprinting that the regulatory factor encoded by GCR1 binds to two elements in the 3′ half of the PGK UAS. These elements contain the sequence CTTCC, which was previously suggested to be important for the activity of the PGK UAS and has been shown to be able to bind Gcrlp in vitro. Furthermore, we find that Gcr1p positively influences PGK transcription, although it is not responsible for the carbon source dependent regulation of PGK mRNA synthesis. In order to mediate its transcriptional influence we find that Gcrtp requires the Rap1p binding site, in addition to its own, but not the Abf1p site. As neither a Rapip nor a Gcr1p binding site alone is able to activate transcription, we propose that Gcr1p and Rapip interact in an interdependent fashion to activate PGK transcription.
References
Baker HV (1986) Glycolytic gene expression in Saccharomyces cerevisiae: nucleotide sequence of GCR1, null mutations, and evidence for expression. Mol Cell Biol 6:3774–3784
Baker HV (1991) GCR1 of Saccharomyces cerevisiae encodes a DNA-binding protein whose binding is abolished by mutations in the CTTCC motif. Proc Natl Acad Sci 88:9443–9447
Bitter GA, Chang KKH, Egan KM (1991) A multi-component upstream activation sequence of the Saccharomyces cerevisiae glyceraldehyde-3-phosphate dehydrogenase gene promoter. Mol Gen Genet 231:22–32
Buchman AR, Lue NF, Kornberg RD (1988) Connections between transcriptional activators, silencers and telomeres as revealed by functional analysis of a yeast DNA-binding protein. Mol Cell Biol 8:5086–5099
Chambers A, Stanway CA, Kingsman AJ, Kingsman SM (1988) The UAS of the yeast PGK gene is composed of multiple functional elements. Nucleic Acids Res 16:8245–8260
Chambers A, Tsang JSH, Stanway CA, Kingsman AJ, Kingsman SM (1989) Transcriptional control of the Saccharomyces cerevisiae PGK gene by RAP1. Mol Cell Biol 9:5516–5524
Chambers A, Stanway CA, Tsang JSH, Henry YAL, Kingsman AJ, Kingsman SM (1990) ARS binding factor 1 binds adjacent to RAP1 at the UASs of the yeast glycolytic genes PGK and PYK1. Nucleic Acids Res 18:5393–5399
Chasman DI, Lue NF, Buchman AR, LaPointe JW, Lorch Y, Kornberg RD (1990) A yeast protein that influences the chromatin structure of UAS, and functions as a powerful auxilliary gene activator. Genes Dev 4:503–514
Clifton D, Fraenkel DG (1981) The gcr (glycolysis regulation) mutation of Saccharomyces cerevisiae. J Biol Chem 256:13074–13078
Della Seta F, Ciafre S-A, Marck C, Santoro B, Presutti C, Sentenac A, Bozzoni I (1990) The ABF1 factor is the transcriptional activator of the L2 ribosomal protein genes in Saccharomyces cerevisiae. Mol Cell Biol 10:2437–2441
Devlin C, Tice-Baldwin K, Shore D, Arndt KT (1991) RAPT is required for BAS1/BAS2- and GCN4-dependent transcription of the yeast HIS4 gene. Mol Cell Biol 11:3642–3651
Gilson E, Roberge M, Giraldo R, Rhodes D, Gasser SM (1993) Distortion of the DNA double helix by RAP1 at silencers and multiple telomeric binding sites. J Mol Biol 231:293–310
Henry YAL (1991) The role of RAP1 and GCR1 in the transcriptional regulation of the Saccharomyces cerevisiae PGK gene. D Phil Thesis, Oxford University
Holland MJ, Yokoi T, Holland JP, Myambo K, Innis MA (1987) The GCR1 gene encodes a positive transcriptional regulator of the enolase and glyceraldehyde-3-phosphate dehydrogenase gene families in Saccharomyces cerevisiae. Mol Cell Biol 7:813–820
Holland JP, Brindle PK, Holland MJ (1990) Sequences within an upstream activation site in the yeast enolase gene ENO2 modulate repression of ENO2 expression in strains carrying a null mutation in the positive regulatory gene GCR1. Mol Cell Biol 10:4863–4871
Holm C, Meeks-Wagner DW, Fangman WL, Botstein D (1986) A rapid, efficient method for isolating DNA from yeast. Gene 42:169–173
Huie MA, Scott EW, Drazinic CM, Löpez MC, Hornstra IK, Yang TP, Baker HV (1992) Characterization of the DNA-binding activity of GCR1: in vivo evidence for two GCR1 binding sites in the upstream activating sequence of TPI of Saccharomyces cerevisiae. Mol Cell Biol 12:2690–2700
López MC, Smerage JB, Baker HV (1993) A simplified vacuum blotting method for genomic sequencing and in vivo footprinting. Biotechniques 15:362–363
Ogden JE, Stanway CA, Kim S, Mellor J, Kingsman AJ, Kingsman SM (1986) Efficient expression of the Saccharomyces cerevisiae PGK gene depends upon an upstream activation sequence but does not require TATA sequences. Mol Cell Biol 6:4335–4343
Rodicio R, Heinisch JJ, Hollenberg CP (1993) Transcriptional control of yeast phosphoglycerate mutase-encoding gene. Gene 125:125–133
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning, a laboratory manual. Cold Spring Harbour Laboratory Press, Cold Spring Harbour, New York
Schmitt ME, Brown TA, Trumpower BL (1990) A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res 18:3091–3092
Scott EW, Allison HE, Baker HV (1990) Characterization of TPI gene expression in isogenic wild-type and gcr1 deletion mutant strains of Saccharomyces cerevisiae. Nucleic Acids Res 18:7099–7107
Scott EW, Baker HV (1993) Concerted action of the transcriptional activators REB1, RAP1 and GCRI in the high level expression of the glycolytic gene TPI. Mol Cell Biol 13:543–550
Stanway CA, Chambers A, Kingsman AJ, Kingsman SM (1989) Characterisation of the transcriptional potency of sub-elements of the UAS of the yeast PGK gene in a PGK mini-promoter. Nucleic Acids Res 17:9205–9218
Stanway CA, Gibbs JM, Kearsey SE, López MC, Baker HV (1994) The yeast co-activator GAL11 positively influences transcription of the phosphoglycerate kinase gene, but only when RAP1 is bound to its upstream activation sequence. Mol Gen Genet 243:207–214
Tornow J, Zeng X, Gao W, Santangelo GM (1993) GCR1, a transcriptional activator in Saccharomyces cerevisiae, complexes with RAP1 and can function without its DNA binding domain. EMBO J 12:2431–2437
Vignais M-L, Sentenac A (1989) Asymmetric DNA bending induced by the yeast multifunctional factor TUF. J Biol Chem 264:8463–8466
Willett CE, Gelfman CM, Holland MJ (1993) A complex regulatory element from the yeast gene ENO2 modulates GCR1-de-pendent transcriptional activation. Mol Cell Biol 13:2623–2633
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Communicated by C. P. Hollenberg
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Henry, Y.A.L., López, M.C., Gibbs, J.M. et al. The yeast protein Gcr1p binds to the PGK UAS and contributes to the activation of transcription of the PGK gene. Molec. Gen. Genet. 245, 506–511 (1994). https://doi.org/10.1007/BF00302263
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DOI: https://doi.org/10.1007/BF00302263