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Transcriptional activation of flanking sequences by Tn1000 insertion

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Abstract

The carotenoid biosynthesis operon of Erwinia herbicola Eho13 consists of five genes, which are organized in the order crtE-crtX-crtY-crtI-crtB. These genes, with the exception of crtX, encode functions of β-carotene biosynthesis and give an orange-coloured phenotype in Escherichia coli. Since crtX is not involved in the biosynthesis of β-carotene, deletion of this gene does not alter the phenotype of pigmented cells. On the other hand, insertion of Tn1000 into crtX or into the upstream untranslated region of the operon resulted in a light-yellow, rather than an unpigmented phenotype, indicating that Tn1000 does not exert a strong polar effect when inserted in this operon. RNA analysis revealed that the sequence downstream from the insertion site was transcribed at a low level. Primer extension showed that the “−35”-like sequence in the terminal inverted repeats was not responsible for the transcription of the downstream sequence. Furthermore, primer extension and polymerase chain reaction (PCR) studies revealed that RNA transcribed from the promoters inside of Tn1000 was extended through the terminal inverted repeats into the adjacent sequences. In addition Tn1000, in either orientation, was able to generate fusion transcripts when placed upstream of a promoterless tetracycline-resistance gene and resulted in cells resistant to the drug. These results showed that Tn1000 insertion transcriptionally activates the DNA sequences adjacent to the transposon.

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References

  • Aiba H, Adhya S, de Crombrugghe B (1981) Evidence for two functional gal promoters in intact Escherichia coli. J Biol Chem 256:11905–11910

    Google Scholar 

  • Arthur A, Sherratt D (1979) Dissection of the transposition process: a transposon-encoded site-specific recombination system. Mol Gen Genet 175:267–274

    Google Scholar 

  • Broom JE, Hill DF, Hughes G, Jones WA, McNaughton JC, Stockwell PA, Petersen GB (1991) Sequence of Tn1000. Gen-Bank accession number X60200

  • Brosius J (1984) Plasmid vector for the selection of promoter. Gene 27:151–160

    Google Scholar 

  • Chou J, Casadaban MJ, Lemaux PG, Cohen SN (1979a) Identification and characterization of a self-regulation repressor of translocation of the Tn3 element. Proc Natl Acad Sci USA 76:4020–4024

    Google Scholar 

  • Chou J, Lemaux PG, Casadaban MJ, Cohen SN (1979b) Transposition protein of Tn3 identification and characterization of an essential repressor controlled gene product. Nature 282:801–806

    Google Scholar 

  • Emerick AW (1982) Read-through transcription from a derepressed Tn3 promoter affects ColEl::Tn3 composite plasmid. Mol Gen Genet 185:408–417

    Google Scholar 

  • Galas DJ, Chandler M (1989) Bacterial insertion sequence. In: Berg DE, Howe M (eds) Mobile DNA. American Society for Microbiology, Washington DC, pp 109–162

    Google Scholar 

  • Guyer MS (1978) The 76 sequence of F is an insertion sequence. J Mol Biol 126:347–365

    Google Scholar 

  • Hundle BS, O'Brien DA, Alberti M, Beyer P, Hearst JE (1992) Functional expression of zeaxanthin glucosyltransferase from Erwinia herbicola and a proposed uridine diphosphate binding site. Proc Natl Acad Sci USA 89:9321–9325

    Google Scholar 

  • Hundle BS, O'Brien DA, Beyer P, Kleinig H, Hearst JE (1993) In vitro expression and activity of lycopene cyclase and β-carotene hydroxylase from Erwinia herbicola. FEBS Lett 315:329–334

    Google Scholar 

  • Jordan E, Saedler H, Starlinger P (1968) O-Zero and strong polar mutations in the gal operon are insertions. Mol Gen Genet 102:353–363

    Google Scholar 

  • Kado CI, Liu ST (1981) Rapid procedure for detection and isolation of large and small plasmids. J Bacteriol 145:1365–1373

    Google Scholar 

  • Krishnan BR, Blakesley RW, Berg DE (1991) Linear amplification DNA sequencing directly from single phage plaques and bacterial colonies. Nucleic Acids Res 19:1153

    Google Scholar 

  • Lee LY (1991) Characterization of carotenoid-synthesis operon of Erwinia herbicola. PhD Thesis, National Yang-Ming Medical College

  • Lee LY, Liu ST (1991) Characterization of the yellow-pigment genes of Erwinia herbicola. Mol Microbiol 5:217–224

    Google Scholar 

  • Liu ST (1993) Carotenoid-biosynthesis genes as a genetic marker for the purpose of gene cloning. Biochem Biophys Res Commun 195:259–263

    Google Scholar 

  • Liu L, Whalen W, Das A, Berg CM (1987) Rapid screening of cloned DNA using a transposon for bi-directional priming: sequence of the Escherichia coli K12 avtA gene. Nucleic Acids Res 15:9461–9469

    Google Scholar 

  • Liu ST, Li SN, Wang DC, Chang SF, Chiang SC, Ho WC, Chang YS, Lai SS (1991) Rapid detection of hog cholera virus in tissues by the polymerase chain reaction. J Virol Methods 35:227–236

    Google Scholar 

  • Malamy MH (1970) Some properties of insertion mutations in the lac operon. In: Beckwith JR, Zipser D (eds) The lactose operon. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, pp 359–373

    Google Scholar 

  • Miller JH (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

    Google Scholar 

  • Misawa N, Nakagawa M, Kobayashi K, Yamano S, Izawa Y, Nakamura K, Harashima K (1990) Elucidation of the Erwinia uredovora carotenoid biosynthetic pathway by functional analysis of gene products expressed in Escherichia coli. J Bacteriol 172:6704–6712

    Google Scholar 

  • Prentki P, Teter B, Chandler M, Galas DJ (1986) Functional promoters created by the insertion of transposable element IS1. J Mol Biol 191:383–393

    Google Scholar 

  • Reed RR, Shibuya GI, Steitz JA (1982) Nucleotide sequence of the γδ resolvase gene and demonstration that its gene product acts as a repressor of transcription. Nature 300:381–383

    Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning, a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Sandmann G, Misawa N (1992) New functional assignment of the carotenogenic gene crtB and crtE with constructs of these genes from Erwinia species. FEMS Lett 90:253–258

    Google Scholar 

  • Sanger F, Nicklen D, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    Google Scholar 

  • Shapiro JA (1969) Mutations caused by the insertion of genetic material into the galactose operon of Escherichia coli. J Mol Biol 40:93–0105

    Google Scholar 

  • Sherratt D (1989) Tn3 and related transposable elements: sitespecific recombination and transposition. In Berg DE, Howe M (eds) Mobile DNA. American Society for Microbiology, Washington DC, pp 163–184

    Google Scholar 

  • Shnurr G, Schmidt A, Sandmann G (1991) Mapping of a carotenogenic gene cluster from Erwinia herbicola and functional identification of six genes. FEMS Lett 78:157–162

    Google Scholar 

  • To KY, Lai EM, Lee LY, Lin TP, Hung CH, Chen CL, Chang YS, and Liu ST (1994) Analysis of the gene cluster encoding carotenoid biosynthesis in Erwinia herbicola Eho13. Microbiology 140:331–333

    Google Scholar 

  • Wells RG, Grindley NDF (1984) Analysis of the y6 res sites required for site-specific recombination and gene expression. J Mol Biol 179:677–687

    Google Scholar 

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Communicated by W. Arber

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Lin, TP., Lai, EM., To, KY. et al. Transcriptional activation of flanking sequences by Tn1000 insertion. Molec. Gen. Genet. 245, 417–423 (1994). https://doi.org/10.1007/BF00302253

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  • DOI: https://doi.org/10.1007/BF00302253

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