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The organization of repeated DNA sequences in the human genome

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Abstract

The arrangement of repetitive and non-repetitive DNA sequences was studied in the human genome. By Ag+-Cs2SO4 density gradient centrifugations of human DNA at different fragment size reannealed to different C0t values and c-RNA hybridization experiments, we have shown the presence of two repetitive DNA fractions, called fast and slow intermediate DNA, with different pattern of sequence organization. — The fast intermediate DNA sequences (6% of the genome; CsCl density in renatured form: 1.703 g/ml) are in part clustered in fragments greater then 24,000 nucleotide pairs and in part in fragments ranging from 1,800 to 600 nucleotide pairs spaced with longer more complex sequences. — The slow intermediate DNA sequences (30% of the genome; CsCl density in renatured form: 1.707 g/ml) appear to be finely interspersed with non-repetitive sequences. At a DNA fragment size of 600 nucleotide pairs only a third of the slow intermediate DNA sequences are free of unique sequences, while the other two thirds are still organized with unique sequences. — It has also been shown that a great amount of the repetitive DNA sequence transcripts in heterogeneous nuclear RNA of HeLa cells are complementary to slow intermediate DNA sequences.

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References

  • Bonner, J., Garrard, W.T., Gottesfeld, J., Holmes, D.S., Sevall, J.S., Wilkes, M.: Functional organization of the mammalian genome. Cold. Spr. Harb. Symp. quant. Biol. 38, 303–310 (1974)

    Google Scholar 

  • Britten, R.J.: Repeated sequences in human DNA. Carnegie Inst. Yearbook 67, 327–330 (1969)

    Google Scholar 

  • Britten, R.J., Khone, D.E.: Repeated sequences in DNA. Science (N.Y.) 161, 529–540 (1968)

    Google Scholar 

  • Cech, T.R., Rosenfeld, A., Hearst, J.E.: Characterization of the most rapidly renaturing sequences in mouse main-band DNA. J. molec. Biol. 81, 299–325 (1973)

    Google Scholar 

  • Chamberlin, M., Berg, P.: Deoxyribonucleic acid-directed synthesis of ribonucleic acid by an enzyme from Escherichia coli. Proc. nat. Acad. Sci. (Wash.) 48, 81–94 (1962)

    Google Scholar 

  • Chamberlin, M.E., Britten, R.J., Davidson, E.H.: Sequence organization in Xenopus DNA studied by electron microscope. J. molec. Biol. 96, 317–333 (1975)

    Google Scholar 

  • Corneo, G, Ginelli, E., Polli, E.: Repeated sequences in human DNA. J. molec. Biol. 48, 319–327 (1970a)

    Google Scholar 

  • Corneo, G., Ginelli, E., Polli, E.: Different satellite deoxyribonucleic acids of guinea pig and ox. Biochemistry 9, 1565–1571 (1970b)

    Google Scholar 

  • Corneo, G., Ginelli, E., Polli, E.: Renaturation properties and localization in heterochromatin of human satellite DNAs. Biochim. biophys. Acta (Amst.) 247, 528–534 (1971)

    Google Scholar 

  • Corneo, G., Ginelli, E., Polli, E.: Human leukemic intermediate DNA components. Acta haemat. 54, 210–220 (1975)

    Google Scholar 

  • Corneo, G., Zardi, L., Polli, E.: Elution of human satellite DNAs on a methylated albumin kieselguhr chromatographic column: isolation of satellite DNA. IV. Biochim. biophys. Acta (Amst.) 269, 201–204 (1972)

    Google Scholar 

  • Davidson, E.H., Hough, B.R., Amenson, C.S., Britten, R.J.: General interspersion of repetitive with non-repetitive sequence elements in the DNA of Xenopus. J. molec. Biol. 77, 1–23 (1973)

    Google Scholar 

  • Gillespie, D., Spiegelman, S.: A quantitative assay for DNA-RNA hybrids with DNA immobilized on a membrane. J. molec. Biol. 12, 829–842 (1965)

    Google Scholar 

  • Ginelli, E., Corneo, G.: Sui DNA satelliti e ripetitivi del genoma umano. Atti Acc. Naz. Lincei Rc. 53, 621–629 (1972)

    Google Scholar 

  • Goldberg, R.B., Crain, W.R., Ruderman, J.V., Moore, G.P., Barnett, T.R., Higgins, R.C., Gelfand, R.A., Galau, G.A., Britten, R.J., Davidson, E.H.: DNA sequence organization in the genomes of five marine invertebrates. Chromosoma (Berl.) 51, 225–251 (1975)

    Google Scholar 

  • Graham, D.E., Neufeld, B.R., Davidson, E.H., Britten, R.J.: Interspersion of repetitive and non-repetitive DNA sequences in the sea urchin genome. Cell 1, 127–137 (1974)

    Google Scholar 

  • Jelinek, W., Molloy, G., Fernández-Muñoz, R., Salditt, M., Darnell, J.E.: Secondary structure in heterogeneous nuclear RNA: involvement of regions from repeated DNA sites. J. molec. Biol. 82, 361–370 (1974)

    Google Scholar 

  • Jensen, R.H., Davidson, N.: Spectrophotometric, potentiometric, and density gradient ultracentrifugation studies of the binding of silver ion by DNA. Biopolymers 4, 17–32 (1966)

    Google Scholar 

  • Jones, K.W.: Chromosomal and nuclear location of mouse satellite DNA in individual cells. Nature (Lond.) 223, 582–587 (1970)

    Google Scholar 

  • Jones, K.W., Corneo, G.: Location of satellite and homogeneous DNA sequences on human chromosomes. Nature (Lond.) New Biol. 233, 268–271 (1971)

    Google Scholar 

  • Jones, K.W., Prosser, J., Corneo, G., Ginelli, E.: The chromosomal location of human satellite DNA. III. Chromosoma (Berl.) 42, 445–451 (1973)

    Google Scholar 

  • Jones, K.W., Purdom, I.F., Prosser, J., Corneo, G.: The chromosomal location of human satellite DNA. I. Chromosoma (Berl.) 49, 161–171 (1974)

    Google Scholar 

  • Manning, J.E., Schmid, C.W., Davidson, N.: Interspersion of repetitive and non-repetitive DNA sequences in the Drosophila melanogaster genome. Cell 4, 141–155 (1975)

    Google Scholar 

  • Marmur, J.: A procedure for the isolation of deoxyribonucleic acids from micro-organism. J. molec. Biol. 3, 208–218 (1961)

    Google Scholar 

  • Marmur, J., Doty, P.: Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. molec. Biol. 5, 109–118 (1962)

    Google Scholar 

  • Melli, M., Ginelli, E., Corneo, G., Di Lernia, R.: Clustering of DNA sequences complementary to repetitive nuclear RNA of Hela cells. J. molec. Biol. 93, 23–38 (1975)

    Google Scholar 

  • Pagulatos, G.N., Darnell, J.E.: Fractionation of heterogeneous nuclear RNA: rates of hybridization and chromosomal distribution of reiterated sequences. J. molec. Biol. 54, 517–535 (1970)

    Google Scholar 

  • Sanchez, O., Yunis, Y.Y.: The relationship between repetitive DNA and chromosomal bands in man. Chromosoma (Berl.), 48, 191–202 (1974)

    Google Scholar 

  • Saunders, G.F., Shirakawa, S., Saunders, P.P., Arrighi, F.E., Hsu, T.C.: Populations of repeated DNA sequences in the human genome. J. molec. Biol. 63, 323–334 (1972)

    Google Scholar 

  • Studier, F.W.: Sedimentation of the size and shape of DNA. J. molec. Biol. 11, 373–390 (1965)

    Google Scholar 

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Ginelli, E., Corneo, G. The organization of repeated DNA sequences in the human genome. Chromosoma 56, 55–68 (1976). https://doi.org/10.1007/BF00293730

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