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Functional analysis of the zinc cluster domain of the CYP1 (HAP1) complex regulator in heme-sufficient and heme-deficient yeast cells

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Abstract

CYP1 determines the expression of several genes whose transcription is heme-dependent in yeast. It exerts regulatory functions even in the absence of heme, usually considered to be its effector. It mediates both positive and negative effects, depending on the target gene and on the redox state of the cell. In the presence of heme, it binds through a cysteine-rich domain in which a histidine residue occupies the position of the sixth and essential cysteine of the otherwise classical zinc cluster DNA-binding domain exemplified by GAL4. We constructed specific missense mutations in the potential CYP1 zinc cluster domain by site-directed mutagenesis and looked for regulatory effects of the mutated proteins under specific physiological conditions. We show that CYP1 does belong to the zinc cluster regulatory family since a sixth essential cysteine residue is indeed present, albeit at a modified position when compared to the consensus sequence. We also show that the amino acid preceding the first cysteine residue of the DNA-binding domain critically affects the efficiency of regulation both in the presence and in the absence of heme: mutations known to affect DNA binding under heme-sufficient conditions also affect regulation under heme-deficient conditions. We therefore surmise that regulation under hemedeficient conditions is dependent upon DNA binding.

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References

  • Arcangioli B, Lescure B (1985) Identification of proteins involved in the regulation of yeast isol-cytochrome c expression by oxygen. EMBO J 4:2627–2633

    Google Scholar 

  • Bonneaud N, Ozier-Kalogeropoulos O, Li G, Labouesse M, Minvielle-Sebastia L, Lacroute F (1991) A family of low and high copy replicative, integrative and single-strand S. cerevisiae/E. coli shuttle vectors. Yeast 7:609–615

    Google Scholar 

  • Bruno A (1990) The UGA3 gene regulating the GABA catabolic pathway in Saccharomyces cerevisiae codes for a putative zincfinger protein acting on RNA amount. Mol Gen Genet 220:269–276

    Google Scholar 

  • Claisse ML, Pété-Aubert G, Clavilier L, Slonimski PP (1970) Méthode d'estimation de la concentration des cytochromes dans les cellules entières de levure. Eur J Biochem 16:430–438

    Google Scholar 

  • Clavilier L, Péré G, Slonimski PP (1969) Mise en évidence de plusieurs loci indépendants impliqués dans la synthèse de l'iso2-cytochrome c chez la levure. Mol Gen Genet 104:195–218

    Google Scholar 

  • Creusot F, Verdiére J, Gaisne M, Slonimski PP (1988) CYP1 (HAP1) regulator of oxygen-dependent gene expression in yeast. I. Overall organization of the protein sequence displays several novel structural domains. J Mol Biol 204:263–276

    Google Scholar 

  • Frazer RS (1975) Turnover of polyadenylated messenger RNA in fission yeast. Evidence for the control of protein synthesis at the translational level. Eur J Biochem 60:477–486

    Google Scholar 

  • Friden P, Schimmel P (1987) LEU3 of Saccharomyces cerevisiae encodes a factor for control of RNA levels of a gorup of leucine-specific genes. Mol Cell Biol 7:2708–2717

    Google Scholar 

  • Gallwitz D, Seidel R (1980) Molecular cloning of the actin gene from yeast Saccharomyces cerevisiae. Nucleic Acids Res 5:1043–1059

    Google Scholar 

  • Guarente L, Lalonde P, Gifford P, Alani E (1984) Distinctly regulated tandem upstream activation sites mediate cataboite repression of the CYC1 gene of S. cerevisiae. Cell 36:503–511

    Google Scholar 

  • Ito H, Fukada Y, Mureata K, Kimura A (1983) Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153:163–168

    Google Scholar 

  • Johnston M (1987) A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae. Microbiol Rev 51:458–476

    Google Scholar 

  • Kalb VF, Woods CN, Turi TG, Dey CR, Sutter TR, Loper JC (1987) Primary structure of the P450 lanosterol demethylase gene from Saccharomyces cerevisiae. DNA 6:529–537

    Google Scholar 

  • Kim KS, Guarente L (1989) Mutations that alter transcriptional activation but not DNA binding in the zinc finger of yeast activator HAP1. Nature 342:200–203

    Google Scholar 

  • Kim KS, Pfeifer K, Powell L, Guarente L (1990) Internal deletions in the yeast transcriptional activator HAP1 have opposite effects at two sequence elements. Proc. Natl. Acad. Sci. USA 87:4524–4528

    Google Scholar 

  • Kudla B, Caddick MX, Langdon T, Martinez-Rossi NM, Bennett CF, Sibley S, Davies RW, Arst HNJ (1990) The regulatory gene areA mediating nitrogen metabolite repression in Aspergillus nidulans. Mutations affecting specificity of gene activation alter a loop residue of a putative “zinc-finger”. EMBO J 9:1355–1364

    Google Scholar 

  • Kulmburg P, Prangé T, Mathieu M, Sequeval D, Scazzocchio C, Felenbock B (1991) Correct intron splicing generates a new type of a putative “zinc-binding” domain in a transcriptional activator of Aspergillus nidulans. FEBS Lett 280:11–16

    Google Scholar 

  • Lodi T, Guiard B (1991) Complex transcriptional regulation of the Saccharomyces cerevisiae CYB2 gene encoding cytochrome b2: CYP1 (HAP1) activator binds to the CYB2 Upstream Activation Site UAS1-B2. Mol Cell Biol 11:3762–3772

    Google Scholar 

  • Maccechini ML, Ruden Y, Blobel G, Schatz G (1979) Import of proteins into mitochondria: precursor forms of the extramitochondrially made F1-ATPase subunit in yeast. Proc Natl Acad Sci USA 76:343–347

    Google Scholar 

  • Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Nebert DW, Nelson DR, Coon MN, Estabrook RW, Feyereisen R, Fujii-Kuriyama Y, Gonzalez FJ, Guengerich FP, Gunsalus IC, Johnson EF, Loper JC, Sato R, Waterman MR, WDJ (1991) The P450 superfamily: update on new sequences, gene mapping, and recommended nomenclature. DNA Cell Biol 10: 1–14

    Google Scholar 

  • Pfeifer K, Prezant T, Guarente L (1987) Yeast HAP1 activator binds to two upstream activation sites of different sequence. Cell 49:19–27

    Google Scholar 

  • Pfeifer K, Kim KS, Kogan S, Guarente L (1989) Functional dissection and sequence of yeast HAP1 activator. Cell 56:291–301

    Google Scholar 

  • Rothstein RJ (1983) One-step gene disruption in yeast. Methods Enzymol 101: 202–211

    Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    Google Scholar 

  • Schneider JC, Guarente L (1991) Regulation of the yeast CYT1 gene encoding cytochrome c1 by HAPI and HAP2/3/4. Mol Cell Biol 11:4934–4942

    Google Scholar 

  • Thomas PS (1980) Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose. Proc Natl Acad Sci USA 77:5201–5205

    Google Scholar 

  • Thorsness M, Schafer W, d'Ari L, Rine J (1989) Positive and negative transcriptional control by heme of genes encoding 3-hydroxy-3-methylglutaryl Coenzyme A reductase. Mol Cell Biol 9:5702–5712

    Google Scholar 

  • Turi T, Loper J (1992) Multiple regulatory elements control expression of the gene encoding the S. cerevisiae cytochrome P450, lanosterol 14α-demethylase (ERG11). J Biol Chem 267:2046–2056

    Google Scholar 

  • Vallee BL, Coleman JE, Auld DS (1991) Zinc fingers, zinc clusters, and zinc twists in DNA-binding domains. Proc Natl Acad Sci USA 88:999–1003

    Google Scholar 

  • Verdière J, Creusot F, Guérineau M (1985) Regulation of the expression of iso2-cytochrome c gene in S. cerevisiae: cloning of the positive regulatory gene CYP1 and identification of the region of its target sequence of the structural gene CYP3. Mol Gen Genet 199:524–533

    Google Scholar 

  • Verdière J, Gaisne M, Guiard B, Defranoux N, Slonimski PP (1988) CYP1 (HAP1) regulator of oxygen-dependent gene expression in yeast. II. Missense mutation suggest alternative zinc fingers as discriminating agents of gene control. J Mol Biol 204:277–282

    Google Scholar 

  • Verdière J, Gaisne M, Labbe-Bois R (1991) CYP1 (HAP1) is a determinant effector of alternative expression of heme-dependent transcribed genes in yeast. Mol Gen Genet 228:300–306

    Google Scholar 

  • Winkler H, Adam G, Matte E, Schanz M, Hartig A, Ruis H (1988) Co-ordinate control of synthesis of mitochondrial and nonmitochondrial hemoproteins: a binding site for the HAP1 (CYP) protein in the UAS region of the yeast catalase T gene (CTT1). EMBO J 7:1799–1804

    Google Scholar 

  • Zagorec M, Buhler J-M, Treich I, Keng T, Guarente L, Labbe-Bois R (1988) Isolation, sequence and regulation by oxygen of the yeast HEM13 gene coding for coproporphyrinogen oxidase. J Biol Chem 263:9718–9724

    Google Scholar 

  • Zhou K, Brisco PRG, Hinkkanen AE, Kohhaw GB (1987) Structure of yeast regulatory gene LEU3 and evidence that LEU3 itself is under the general amino acid control. Nucleic Acids Res 15:5261–5273

    Google Scholar 

  • Zitomer RS, Sellers JW, McCarter DW, Hastings GA, Wick P, Lowry CV (1987) Elements involved in oxygen regulation of the Saccharomyces cerevisiae CYC7 gene. Mol Cell Biol 7:2212–2220

    Google Scholar 

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Communicated by W Gajewski

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Defranoux, N., Gaisne, M. & Verdiére, J. Functional analysis of the zinc cluster domain of the CYP1 (HAP1) complex regulator in heme-sufficient and heme-deficient yeast cells. Molec. Gen. Genet. 242, 699–707 (1994). https://doi.org/10.1007/BF00283425

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