Skip to main content
Log in

A genetic approach to the identification of functional amino acids in protein p6 of Bacillus subtilis phage ø29

  • Original Paper
  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Abstract

Protein p6 of the Bacillus subtilis phage ø29 is essential for in vivo viral DNA replication. This protein activates the initiation of ø29 DNA replication in vitro by forming a multimeric nucleoprotein complex at the replication origins. The N-terminal region of protein p6 is involved in DNA binding, as shown by in vitro studies with p6 proteins altered by deletions or missense mutations. We report on the development of an in vivo functional assay for protein p6. This assay is based on the ability of protein p6-producing B. subtilis non-suppressor (su ) cells to support growth of a ø29 sus6 mutant phage. We have used this trans-complementation assay to investigate the effect on in vivo viral DNA synthesis of missense mutations introduced into the protein p6 N-terminal region. The alteration of lysine to alanine at position 2 resulted in a partially functional protein, whereas the replacement of arginine by alanine at position 6 gave rise to an inactive protein. These results indicate that arginine at position 6 is critical for the in vivo activity of protein p6. Our complementation system provides a useful genetic approach for the identification of functionally important amino acids in protein p6.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Ayala JA, Pld J, Desviat LR, de Pedro MA (1988) A lacZ-pbpB gene fusion coding for an inducible hybrid protein that recognizes localized sites in the inner membrane of Escherichia coli. J Bacteriol 170:3333–3341

    Google Scholar 

  • Barthelemy I, Mellado RP, Salas M (1989) In vitro transcription of bacteriophage ø29 DNA: inhibition of early promoters by the viral replication protein p6. J Virol 63:460–462

    Google Scholar 

  • Blanco L, Gutiérrez J, Ldzaro JM, Bernad A, Salas M (1986) Replication of phage ø29 DNA in vitro: role of the viral protein p6 in initiation and elongation. Nucleic Acids Res 14:4923–4937

    Google Scholar 

  • Bravo A, Alonso JC (1990) The generation of concatemeric plasmid DNA in Bacillus subtilis as a consequence of bacteriophage SPP1 infection. Nucleic Acids Res 18:4651–4657

    Google Scholar 

  • Bravo A, Alonso JC, Trautner TA (1990) Functional analysis of the Bacillus subtilis bacteriophage SPP1 pac site. Nucleic Acids Res 18:2881–2886

    Google Scholar 

  • Bravo A, Hermoso JM, Salas M (1994) In vivo functional relationships among terminal proteins of Bacillus subtilis ø29-related phages. Gene (in press)

  • Breitling R, Sorokin AV, Behnke D (1990) Temperature-inducible gene expression in Bacillus subtilis mediated by the cI857-encoded repressor of bacteriophage lambda. Gene 93:35–40

    Google Scholar 

  • Brosius J, Dull TJ, Sleeter DD, Noller HF (1981) Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148:107–127

    Google Scholar 

  • Carrascosa JL, Camacho A, Moreno F, Jiménez F, Mellado RP, Viñuela E, Salas M (1976) Bacillus subtilis phage ø29: characterization of gene products and functions. Eur J Biochem 66:229–241

    Google Scholar 

  • Cunningham BC, Wells JA (1989) High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science 244:1081–1085

    Google Scholar 

  • Escarmís C, Guirao D, Salas M (1989) Replication of recombinant ø29 DNA molecules in Bacillus subtilis protoplasts. Virology 169:152–160

    Google Scholar 

  • Freire R, Salas M, Hermoso JM (1994) A new protein domain for binding to DNA through the minor groove. EMBO J (in press)

  • Gutiérrez C, Freire R, Salas M, Hermoso JM (1994) Assembly of phage ø29 genome with viral protein p6 into a compact complex. EMBO J 13:269–276

    Google Scholar 

  • Hashimoto F, Horigome T, Kanbayashi M, Yoshida K, Sugano H (1983) An improved method for separation of low-molecular-weight polypeptides by electrophoresis in sodium dodecyl sulfate-polyacrylamide gel. Anal Biochem 129:192–199

    Google Scholar 

  • Kraft R, Tardiff J, Krauter KS, Leinwand LA (1988) Using miniprep plasmid DNA for sequencing double stranded templates with SequenaseTM. Biotechniques 6:544–547

    Google Scholar 

  • Maciag IE, Viret JF, Alonso JC (1988) Replication and incompatibility properties of plasmid pUB110 in Bacillus subtilis. Mol Gen Genet 212:232–240

    Google Scholar 

  • McKenzie T, Hoshino T, Tanaka T, Sueoka N (1986) The nucleotide sequence of pUB110: some salient features in relation to replication and its regulation. Plasmid 15:93–103

    Google Scholar 

  • Mellado RP, Salas M (1982) High level synthesis in Escherichia coli of the Bacillus subtilis phage ø29 proteins p3 and p4 under the control of phage lambda PL promoter. Nucleic Acids Res 10:5773–5784

    Google Scholar 

  • Mellado RP, Viñuela E, Salas M (1976) Isolation of a strong suppressor of nonsense mutations in Bacillus subtilis. Eur J Biochem 65:213–223

    Google Scholar 

  • Mellado RP, Peñalva MA, Inciarte MR, Salas M (1980) The protein covalently linked to the 5′ termini of the DNA of Bacillus subtilis phage ø29 is involved in the initiation of DNA replication. Virology 104:84–96

    Google Scholar 

  • Moreno F, Camacho A, Viñuela E, Salas M (1974) Suppressor-sensitive mutants and genetic map of Bacillus subtilis bacteriophage ø29. Virology 62:1–16

    Google Scholar 

  • Murray CL, Rabinowitz JC (1982) Nucleotide sequences of transcription and translation initiation regions in Bacillus phage ø29 early genes. J Biol Chem 257:1053–1062

    Google Scholar 

  • Otero MJ, Ldzaro JM, Salas M (1990) Deletions at the N terminus of bacteriophage ø29 protein p6: DNA binding and activity in ø29 DNA replication. Gene 95:25–30

    Google Scholar 

  • Palzkill T, Botstein D (1992) Probing β-lactamase structure and function using random replacement mutagenesis. Proteins Structure Function Genet 14:29–44

    Google Scholar 

  • Pastrana R, Ldzaro JM, Blanco L, García JA, Méndez E, Salas M (1985) Overproduction and purification of protein p6 of Bacillus subtilis phage o29: role in the initiation of DNA replication. Nucleic Acids Res 13:3083–3100

    Google Scholar 

  • Reidhaar-Olson IF, Sauer RT (1988) Combinatorial cassette mutagenesis as a probe of the informational content of protein sequences. Science 241:53–57

    Google Scholar 

  • Reilly BE, Zeece VM, Anderson DL (1973) Genetic study of suppressor-sensitive mutants of the Bacillus subtilis bacteriophage ø29. J Virol 11:756–760

    Google Scholar 

  • Rottländer E, Trautner TA (1970) Genetic and transfection studies with B. subtilis phage SP50. I. Phage mutants with restricted growth on B. subtilis strain 168. Mol Gen Genet 108:47–60

    Google Scholar 

  • Salas M (1991) Protein-priming of DNA replication. Annu Rev Biochem 60:39–71

    Google Scholar 

  • Salas M, Rojo F (1993) Replication and transcription of bacteriophage ø29 DNA. In: Sonenshein AL, Hoch JA, Losick R (eds): Bacillus subtilis and other gram-positive bacteria: biochemistry, physiology, and molecular genetics. American Society for Microbiology, Washington, DC, pp 843–857

    Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    Google Scholar 

  • Semon D, Movva NR, Smith TF, Alama ME, Davies J (1987) Plasmid-determined bleomycin resistance in Staphylococcus aureus. Plasmid 17:46–53

    Google Scholar 

  • Serrano M, Gutiérrez J, Prieto I, Hermoso JM, Salas M (1989) Signals at the bacteriophage ø29 DNA replication origins required for protein p6 binding and activity. EMBO J 8:1879–1885

    Google Scholar 

  • Serrano M, Salas M, Hermoso JM (1990) A novel nucleoprotein complex at a replication origin. Science 248:1012–1016

    Google Scholar 

  • Serrano M, Gutiérrez C, Salas M, Hermoso JM (1993) Superhelical path of the DNA in the nucleoprotein complex that activates the initiation of phage ø29 DNA replication. J Mol Biol 230:248–259

    Google Scholar 

  • Serrano M, Gutiérrez C, Freire R, Bravo A, Salas M, Hermoso JM (1994) Phage ø29 protein p6: a viral histone-like protein. Biochimie (in press)

  • Talavera A, Jiménez F, Salas M, Viñuela E (1971) Temperature-sensitive mutants of bacteriophage ø29. Virology 46:586–595

    Google Scholar 

  • Whiteley HR, Ramey WD, Spiegelman GB, Holder RD (1986) Modulation of in vivo and in vitro transcription of bacteriophage ø29 early genes. Virology 155:392–401

    Google Scholar 

  • Wurst H, Pohl FM (1991) Mutant profiles of selectable genetic elements. Proc Natl Acad Sci USA 88:9909–9913

    Google Scholar 

  • Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103–119

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by R. Devoret

Rights and permissions

Reprints and permissions

About this article

Cite this article

Bravo, A., Hermoso, J.M. & Salas, M. A genetic approach to the identification of functional amino acids in protein p6 of Bacillus subtilis phage ø29. Molec. Gen. Genet. 245, 529–536 (1994). https://doi.org/10.1007/BF00282215

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00282215

Key words

Navigation