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Structure and expression of the tobacco nuclear gene encoding the 33 kDa chloroplast ribonucleoprotein

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Abstract

Tobacco chloroplasts contain a family of ribonucleoproteins (RNPs) which appear to be involved in mRNA processing and splicing in chloroplasts. We have characterized a new cDNA, 33k-6, potentially encoding a tobacco 33 kDa chloroplast RNP (cp33) homologue. This cDNA has a 78 by insertion near the 3′ end with respect to previously characterized cp33 cDNAs, leading to the creation of an alternative C-terminal sequence. The cp33 protein is encoded by a single-copy nuclear gene in Nicotiana sylvestris, which contains three introns. No typical TATA box is present in the upstream region of the gene. Multiple transcription start sites are often observed for promoters lacking TATA boxes, and have been suggested in the cp33 gene. Sequence comparison revealed that the 78 by insertion in 33k-6 is derived from the third intron of the cp33 gene which is not removed during pre-mRNA splicing. Ribonuclease protection analysis showed that the processing of the third intron is slow compared to the other introns. A possible role for the partially spliced mRNA (cp33k-6) is discussed.

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References

  • Amemiya Y, Miyahara J (1988) Imaging plate illuminates many fields. Nature 336:89–90

    Google Scholar 

  • Bentley RC, Keene JD (1991) Recognition of U1 and U2 small nuclear RNAs can be altered by a 5-amino-acid segment in the U2 small nuclear ribonucleoprotein particle (snRNP) B″ protein and through interactions with U2 snRNP-A′ protein. Mol Cell Biol 11:1829–1839

    Google Scholar 

  • Bisanz-Sever C, Mache R (1992) Organization and expression of the nuclear gene coding for the plastid-specific S22 ribosomal protein from spinach. Plant Mol Biol 18:337–344

    Google Scholar 

  • Brown JWS, Feix G, Frendewey D (1986) Accurate in vitro splicing of two pre-mRNA plant introns in a HeLa cell nuclear extract. EMBO J 5:2749–2758

    Google Scholar 

  • Cohen JB, Broz SD, Levinson AD (1989) Expression of the H-ras proto-oncogene is controlled by alternative splicing. Cell 58:461–472

    Google Scholar 

  • Dynan WS (1986) Promoters for housekeeping genes. Trends Genet 2:196–197

    Google Scholar 

  • Gamble PE, Mullet JE (1989) Blue light regulates the accumulation of two psbD-psbC transcripts in barley chloroplasts. EMBO J 8:2785–2794

    Google Scholar 

  • Goodall GJ, Filipowicz W (1990) The minimum functional length of pre-mRNA introns in monocots and dicots. Plant Mol Biol 14:727–733

    Google Scholar 

  • Gruissem W (1989) Chloroplast gene expression: How plants turn their plastids on. Cell 56:161–170

    Google Scholar 

  • Hoch B, Maier RM, Appel K, Igloi GL, Kössel (1991) Editing of a chloroplast mRNA by creation of an initiation codon. Nature 353:178–180

    Google Scholar 

  • Kenan DJ, Query CC, Keene JD (1991) RNA recognition: towards identifying determinants of specificity. Trends Biochem Sci 16:214–220

    Google Scholar 

  • Kuchka MR, Goldschmidt-Clermont M, van Dillewijin J, Rochaix JD (1989) Mutation at the Chlamydomonas nuclear NAC2 locus specifically affects stability of the chloroplast psbD transcript encoding polypeptids D2 of PS II. Cell 58:869–876

    Google Scholar 

  • Li Y, Sugiura M (1990) Three distinct ribonucleoproteins from tobacco chloroplasts: each contains a unique amino terminal acidic domain and two ribonucleoprotein consensus motifs. EMBO J 9:3059–3066

    Google Scholar 

  • Li Y, Sugiura M (1991) Nucleic acid-binding specificities of tobacco chloroplast ribonucleoproteins. Nucleic Acids Res 19:2893–2896

    Google Scholar 

  • Li Y, Ye L, Sugita M, Sugiura M (1991) Tobacco nuclear gene for the 31 kd chloroplast ribonucleoprotein: genomic organization, sequence analysis and expression. Nucleic Acids Res 19:2987–2991

    Google Scholar 

  • Mullet JE (1988) Chloroplast development and gene expression. Annu Rev Plant Physiol Plant Mol Biol 39:475–502

    Google Scholar 

  • Palmer JD (1990) Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet 6:115–120

    Google Scholar 

  • Query CC, Bentley RC, Keene JD (1989) A common RNA recognition motif identified within a defined U1 RNA binding domain of the 70K U1 snRNP protein. Cell 57:89–101

    Google Scholar 

  • Scherly D, Boelens W, Dathan NA, van Venrooij WJ, Mattaj IW (1990) Major determinants of the specificity of interaction between small nuclear ribonucleoproteins “U1A and U2B” and their cognate RNAs. Nature 345:562–506

    Google Scholar 

  • Scherly D, Boelens W, van Venrooij WJ, Dathan NA, Hamm J, Mattaj IW (1989) Identification of the RNA binding segment of human U1 A protein and definition of its binding site on U1 snRNA. EMBO J 8:4163–4170

    Google Scholar 

  • Schuster G, Gruissem W (1991) Chloroplast mRNA 3′ end processing requires a nuclear-encoded RNA-binding protein. EMBO J 10:1493–1502

    Google Scholar 

  • Sugiura M (1992) The chloroplast genome. Plant Mol Biol 9:149–168

    Google Scholar 

  • Surowy CS, van Samen VL, Scheib-Wixted SM, Spritz RA (1989) Direct, sequence-specific binding of the human U1-70K ribonucleoprotein antigen protein to loop I of U1 small nuclear RNA. Mol Cell Biol 9:4179–4186

    Google Scholar 

  • Voelker TA, Moreno J, Chrispeels MJ (1990) Expression analysis of a pseudogene in transgenic tobacco: A frameshift mutation prevents mRNA accumulation. Plant Cell 2:255–261

    Google Scholar 

  • Ye L, Li Y, Fukami-Kobayashi, K, Go M, Konishi T, Watanabe A, Sugiura M (1991) Diversity of a ribonucleoprotein family in tobacco chloroplasts: two new chloroplast ribonucleoproteins and a phylogenetic tree of ten chloroplast RNA-binding domains. Nucleic Acids Res 19:6485–6490

    Google Scholar 

  • Zinn K, DiMaio D, Maniatis T (1983) Identification of two distinct regulatory regions adjacent to the human β-interferon gene. Cell 34:865–879

    Google Scholar 

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Communicated by M. Sekiguchi

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Li, Y., Nagayoshi, S., Sugita, M. et al. Structure and expression of the tobacco nuclear gene encoding the 33 kDa chloroplast ribonucleoprotein. Molec. Gen. Genet. 239, 304–309 (1993). https://doi.org/10.1007/BF00281632

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  • DOI: https://doi.org/10.1007/BF00281632

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