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Molecular analysis of allelic polymorphism at the AAT2 locus of alfalfa

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Abstract

Aspartate aminotransferase (AAT) plays a key enzymatic role in the assimilation of symbiotically fixed nitrogen in legume root nodules. In alfalfa, two distinct genetic loci encode dimeric AAT enzymes: AAT1, which predominates in roots, and AAT2, which is expressed at high levels in nodules. Three allozymes of AAT2 (AAT2a, −2b and −2c), differing in net charge, result from the expression of two alleles, AAT2A and AAT2C, at this locus. Utilizing antiserum to alfalfa AAT2, we have previously isolated from an expression library one AAT2 cDNA clone. This clone was used as a hybridization probe to screen cDNA libraries for additional AAT2 cDNAs. Four different clones were obtained, two each that encode the AAT2a and AAT2c enyzme subunits. These two sets of cDNAs encode polypeptides that differ in net charge depending upon the amino acid at position 296 (valine or glutamic acid). Within each set of alleles, the two members differ from each other by the presence or absence of a 30 by (ten amino acid) sequence. The presence or absence of this ten amino acid sequence has no effect on the size or charge of the mature AAT2 protein because it is located within the region encoding the protein's transit peptide, which is proteolytically removed upon transport into plastids. The data suggest that a deletion event has occurred independently in two AAT2 progenitor alleles, resulting in the four allelic cDNA variants observed. The deletion of this ten amino acid sequence does not appear to impair the normal maturation of the enzyme.

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References

  • Edwards K, Johnstone C, Thompson C (1991) A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res 19:1349

    Google Scholar 

  • Farnham MW, Miller SS, Griffith SM, Vance CP (1990) Aspartate aminotransferase in alfalfa root nodules. II. Immunological distinction between two forms of the enzyme. Plant Physiol 93:603–610

    Google Scholar 

  • Farnham MW, Degenhart NR, Vance CP, Barnes DK (1992) Molecular and whole-plant responses to selection for enzyme activity in alfalfa root nodules: evidence for molecular compensation of aspartate aminotransferase expression. Theor Appl Genet 84:355–361

    Google Scholar 

  • Fotheringham IG, Dacey SA, Taylor PP, Smith TJ, Hunter MG, Finlay ME, Primrose SB, Parker DM, Edwards RM (1986) The cloning and sequence analysis of the aspC and tyrB genes from Eschericia coli K12. Comparison of the primary structures of the aspartate aminotransferase and aromatic aminotransferase of E. coli with those of aspartate aminotransferase isoenzymes. Biochem J 234:593–604

    Google Scholar 

  • Gantt SJ, Larson RJ, Farnham MW, Pathirana SM, Miller SS, Vance CP (1992) Aspartate aminotransferase in effective and ineffective alfalfa nodules. Cloning of a cDNA and determination of enzyme activity, protein, and mRNA levels. Plant Physiol 98:868–878

    Google Scholar 

  • Griffith SM, Vance CP (1989) Aspartate aminotransferase in alfalfa root nodules. I. Purification and partial characterization. Plant Physiol 90:1622–1629

    Google Scholar 

  • Grossberger D (1987) Minipreps of DNA from bacteriophage lambda. Nucleic Acids Res 15:6737

    Google Scholar 

  • Hatch MD, Mau SC (1973) Activity, location and role of aspartate aminotransferase and alanine aminotransferase isoenzymes in leaves with C4 photosynthesis. Arch Biochem Biophys 156:195–206

    Google Scholar 

  • Henikoff S (1987) Unidirectional digestion with exonuclease III in DNA sequence analysis. Methods Enzymol 155:156–165

    Google Scholar 

  • Holliday R (1964) A mechanism for gene conversion in fungi. Genet Res 5:282–304

    Google Scholar 

  • Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203–221

    Google Scholar 

  • Obaru K, Nomiyama H, Shimada K, Nagashima F, Morino Y (1986) Cloning and sequence analysis of mRNA for mouse aspartate aminotransferase isoenzymes. J Biol Chem 261:16976–16983

    Google Scholar 

  • Ornstein L (1964) Disc electrophoresis. II. Method and application to human serum protein. Ann NY Acad Sci 121:404–427

    Google Scholar 

  • Reynolds PHS, Smith LA, Dickson MJJ, Jones WT, Jones SD, Rodber KA, Carne A, Liddane CP (1992) Molecular cloning of a cDNA encoding aspartate aminotransferase-P2 from lupin root nodules. Plant Mol Biol 19:465–472

    Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis TJ (1989) Molecular cloning: a laboratory manual, second edn. Cold Spring Harbor Laboratory Press, NY

    Google Scholar 

  • Schwartz-Sommer Z, Gierl A, Cuypers H, Peterson P, Saedler H (1985) Plant transposable elements generate the DNA sequence diversity needed in evolution. EMBO J 4:591–597

    Google Scholar 

  • Shubert KR (1986) Products of biological nitrogen fixation in higher plants: synthesis, transport and metabolism. Annu Rev Plant Physiol 37: 539–574

    Google Scholar 

  • Smith GP (1977) Evolution of repeated DNA sequences by unequal crossover. Science 191:528–535

    Google Scholar 

  • Strommer JN, Gregerson RG, Vayda M (1992) Isolation and characterization of plant mRNA. In: Glick B, Thompson J (eds) Methods in plant molecular biology and biotechnology. CRC Press, Boca Raton, Fla

    Google Scholar 

  • Szostak JW, Orr-Weaver TL, Rothstein RJ, Stahl FW (1983) The doublestrand-break repair model for recombination. Cell 33:25–35

    Google Scholar 

  • Taniguchi M, Sawaki H, Sasakawa H, Hase T, Sugiyama T (1992) Cloning and sequence analysis of cDNA encoding aspartate aminotransferase isozymes from Panicum miliaceum L., a C4 plant. Eur J Biochem 204:611–620

    Google Scholar 

  • Udvardi MK, Kahn ML (1991) Isolation and analysis of a cDNA clone that encodes an alfalfa (Medicago sativa) aspartate aminotransferase. Mol Gen Genet 231:97–105

    Google Scholar 

  • Wallsgrove RM, Keys AJ, Lea P, Miflin BJ (1983) Photosynthesis, photorespiration and nitrogen metabolism. Plant Cell Environ 6:301–309

    Google Scholar 

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Communicated by H. Hennecke

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Gregerson, R.G., Petrowski, M., Larson, R.L. et al. Molecular analysis of allelic polymorphism at the AAT2 locus of alfalfa. Molec. Gen. Genet. 241, 124–128 (1993). https://doi.org/10.1007/BF00280209

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  • DOI: https://doi.org/10.1007/BF00280209

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