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The population genealogy of the infinitely-many neutral alleles model

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Abstract

A process analogous to Kingman's coalescent is introduced to describe the genealogy of populations evolving according to the infinitelymany neutral alleles model. The process records population frequencies in old and new classes, and labels the new classes in order of decreasing age. Its marginal distribution is characterized in a form which is amenable to explicit calculations and the transition densities of the associated K-allele models follow readily from this representation.

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References

  • Donnelly, P.: Partition structures, Polya urns, the Ewens sampling formula and the ages of alleles. Theor. Popul. Biol. 30, 271–288 (1986a)

    Google Scholar 

  • Donnelly, P.: Dual processes in population genetics. In: Tautu, P. (ed.) Stochastic spatial processes, (Lect. Notes Math., Vol. 1212, pp. 94–105) Berlin, Heidelberg, New York: Springer (1986b)

    Google Scholar 

  • Donnelly, P., Tavaré, S.: The ages of alleles and a coalescent. Adv. Appl. Probab. 18, 1–19 (1986)

    Google Scholar 

  • Ethier, S. N., Kurtz, T. G.: The infinitely-many-neutral-alleles diffusion model. Adv. Appl. Probab. 13, 429–452 (1981)

    Google Scholar 

  • Ethier, S. N., Kurtz, T. G.: Markov processes: characterization and convergence. New York: Wiley (1986)

    Google Scholar 

  • Griffiths, R. C.: A transition density expansion for a multi-allele diffusion model. Adv. Appl. Probab. 11, 310–325 (1979)

    Google Scholar 

  • Griffiths, R. C.: Lines of descent in the diffusion approximation of neutral Wright-Fisher models. Theor. Popul. Biol. 17, 37–50 (1980)

    Google Scholar 

  • Griffiths, R. C., Li, W.-H.: Simulating allele frequencies in a population, and the genetic differentiation of populations under mutation pressure. Theor. Popul. Biol. 23, 19–33 (1983)

    Google Scholar 

  • Johnson, N. L., Kotz, S.: Continuous multivariate distributions. New York: Wiley 1972

    Google Scholar 

  • Karr, A. F.: Point processes and their statistical inference. New York: Dekker 1986

    Google Scholar 

  • Kingman, J. F. C.: Random partitions in population genetics. Proc. Roy. Soc. A 361, 1–20 (1978)

    Google Scholar 

  • Kingman, J. F. C.: Mathematics of genetic diversity. CBMS Regional Conference in Applied Mathematics, 34. S.I.A.M. (1980)

  • Kingman, J. F. C.: On the genealogy of large populations, Adv. Appl. Probab. 19A, 27–43 (1982a)

    Google Scholar 

  • Kingman, J. F. C.: The coalescent. Stochastic Processes Appl. 13, 235–248 (1982b)

    Google Scholar 

  • Kingman, J. F. C.: Exchangeability and the evolution of large populations. In: Koch, F., Spizzichino, I. (eds.) Exchangeability in probability and statistics, pp. 97–112. Amsterdam: North Holland (1982c)

    Google Scholar 

  • Tavaré, S.: Line of descent and genealogical processes and their application in population genetics models. Theor. Popul. Biol. 26, 119–164 (1984)

    Google Scholar 

  • Watterson, G. A.: Lines of descent and the coalescent. Theor. Popul. Biol. 26, 77–92 (1984)

    Google Scholar 

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Donnelly, P., Tavaré, S. The population genealogy of the infinitely-many neutral alleles model. J. Math. Biology 25, 381–391 (1987). https://doi.org/10.1007/BF00277163

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  • DOI: https://doi.org/10.1007/BF00277163

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