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The organization of gene in yeast mitochondrial DNA

III. Comparison of the physical maps of the mitochondrial DNAs from three wild-type Saccharomyces strains

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Summary

  1. 1)

    We have constructed independent physical maps of the mtDNAs from three different wild-type Saccharomyces strains by double-digestion analysis and hybridization analysis, using restriction endonucleases EcoRI, HindII, HindIII, PstI, BamHI, Aval, HhaI, SalI and XhoI. Twentynine restriction enzyme sites have been localized on the mtDNA of Saccharomyces carlsbergensis, 47 on the mtDNA of Saccharomyces cerevisiae strain JS1-3D and 38 on the mtDNA of Saccharomyces cerevisiae strain KL14-4A.

  2. 2)

    Although the three DNAs show considerable differences in their fragmentation patterns with most nucleases tested, the overall sequence organization of the three maps of 30–40 fragments is identical. Differences in the maps can be explained by extra restriction enzyme recognition sites, possibly located on inserted pieces of DNA and by insertions and deletions.

  3. 3)

    Four major insertions (900, 1,500, 2,600 and 3,000 bp long) are found in KL14-4A mtDNA relative to Saccharomyces carlsbergensis mtDNA. These insertions are clustered in one quadrant of the mtDNA and account for the difference in size of these two mtDNAs (75,750 and 68,000 bp, respectively).

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Abbreviations

SSC:

150 mM NaCl, 15 mM sodium citrate (pH 7.0)

cRNA:

complementary RNA

(k)bp:

(kilo)basepairs

DTT:

dithiothreitol

Py:

pyrimidine

Pu:

purine

fragment nomenclature:

see Methods

References

  • Bernardi, G., Prunell, A., Fonty, G., Kopecka, H., Strauss, F.: The mitochondrial genome of yeast: Organization, evolution and petite mutation. In: The genetic function of mitochondrial DNA (Saccone, C. and Kroon, A.M., eds.) pp. 185–198. Amsterdam: North-Holland 1976

    Google Scholar 

  • Bernardi, G., Prunell, A., Kopecka, H.: An analysis of the mitochondrial genomes of yeast with restriction enzymes. In: Molecular biology of nucleocytoplasmic relationships (Puiseux-Dao, S., ed.), pp. 85–90. Amsterdam: Elsevier 1975

    Google Scholar 

  • Borst, P., Sanders, J.P.M.: Heyting, C.: Genes on Saccharomyces mitochondrial DNA. In: Genetics, biogenesis and bioenergetics of mitochondria (Bandlow, W., Schweyen, R.J., Thomas, D.Y., Wolf, K. and Kaudewitz, F., eds.), pp. 85–97. Berlin: De Gruyter 1976

    Google Scholar 

  • Borst, P., Sanders, J.P.M., Heyting, C.: Biochemical methods to locate genes on the physical map of yeast mitochondrial DNA. In: Methods in enzymology (Fleischer, S. and Packer, L., eds.). New York: Academic Press 1978, in press

    Google Scholar 

  • Burgess, R.R., Travers, A.A.: DNA-dependent RNA polymerase. In: Procedures in nucleic acid research (Cantoni, G.L. and Davies, D.R., eds.), Vol. 2, pp. 851–863. New York: Harper & Row 1971

    Google Scholar 

  • Cobon, G.S., Groot Obbink, D.J., Hall, R.M., Maxwell, R., Murphy, M., Rytka, J., Linnane, A.W.: Mitochondrial genes determining cytochrome b (complex III) and cytochrome oxidase function. In: Genetics and biogenesis of chloroplasts and mitochondria (Bücher, Th., Neupert, W., Sebald, W. and Werner, S., eds.), pp. 453–460, Amsterdam: North-Holland 1976

    Google Scholar 

  • Crawford, L.V., Robbins, A.K.: The cleavage of polyoma virus DNA by restriction enzymes KpnI and PstI. J. gen. Virol. 31, 315–322 (1976)

    Google Scholar 

  • DiFranco, A., Sanders, J.P.M., Heyting, C., Borst, P., Slonimski, P.P.: Restriction enzyme analysis and physical mapping of mitochondrial DNA from petite mutants, carrying a genetic marker for oligomycin or paromomycin resistance. In: The genetic function of mitochondrial DNA (Saccone, C. and Kroon, A.M., eds.), pp. 291–304. Amsterdam: North-Holland 1976

    Google Scholar 

  • Dujon, B., Slonimski, P.P., Weill, L.: Mitochondrial genetics IX. A model for recombination and segregation of mitochondrial genomes in Saccharomyces cerevisiae. Genetics 78, 415–437 (1974)

    Google Scholar 

  • Flavell, R.A., Van den Berg, F.M.: The isolation of duplex DNA containing (dA·dT) clusters by affinity chromatography on poly(U) Sephadex. FEBS Letters 58, 90–93 (1975)

    Google Scholar 

  • Gillespie, D., Spiegelman, S.: A quantitative assay for DNA-RNA hybrids with DNA immobilized on a membrane. J. molec. Biol. 12, 829–842 (1965)

    Google Scholar 

  • Greene, P.J., Betlach, M.C., Goodman, J.M., Boyer, H.W.: The EcoRI restriction endonuclease. In: DNA replication (Wickner, R.B., ed.), pp. 87–111. New York: Marcel Dekker 1974

    Google Scholar 

  • Groot, G.S.P., Flavell, R.A., Sanders, J.P.M.: Sequence homology of nuclear and mitochondrial DNAs of different yeasts. Biochim. biophys. Acta (Amst.) 378, 186–194 (1975)

    Google Scholar 

  • Heyting, C., Sanders, J.P.M.: The physical mapping of some genetic markers in the 21S ribosomal region of the mitochondrial DNA of yeast. In: The genetic function of mitochondrial DNA (Saccone, C. and Kroon, E.M., eds.), pp. 273–280. Amsterdam: North-Holland 1976

    Google Scholar 

  • Hollenberg, C.P., Borst, P., Van Bruggen, E.F.J.: Mitochondrial DNA. V. A25-μ closed circular duplex DNA molecule in wild-type mitochondria. Biochim. biophys. Acta (Amst.) 209, 1–15 (1970)

    Google Scholar 

  • Ito, J., Kawamura, F., Yanofsky, S.: Analysis of ϕ29 and ϕ15 genomes by bacterial restriction endonucleases EcoRI and HpaI. Virol. 70, 37–51 (1976)

    Google Scholar 

  • Moorman, A.F.M., Grivell, L.A.: Coupled transcription-translation of yeast mitochondrial DNA in vitro as a means of gene identification and mapping. In: The genetic function of mitochondrial DNA (Saccone, C. and Kroon, A.M., eds.), pp. 281–289. Amsterdam: North-Holland 1976

    Google Scholar 

  • Moorman, A.F.M., Grivell, L.A., Katan, M.B., Van Ommen, G.J.B., Meiland, C.M.: Translation of mitochondrial messenger RNAs in vitro as an approach to the identification of gene products of yeast mitochondrial DNA. In: Genetics, biogenesis and bioenergetics of mitochondria (Bandlow, W., Schweyen, R.J., Thomas, D.Y., Wolf, K. and Kaudewitz, F., eds.), pp. 241–258. Berlin: De Gruyter 1976

    Google Scholar 

  • Morimoto, R., Lewin, A., Merten, S., Rabinowitz, M.: Restriction endonuclease mapping and analysis of grande and mutant yeast mitochondrial DNA. In: Genetics and biogenesis of chloroplasts and mitochondria (Bücher, Th., Neupert, W., Sebald, W. and Werner, S., eds.), pp. 519–524. Amsterdam: North-Holland 1976

    Google Scholar 

  • Murray, K., Hughes, S.G., Brown, J.S., Bruce, S.A.: Isolation and characterization of two sequence-specific endonucleases from Anabaena variabilis. Biochem. J. 159, 317–322 (1976)

    Google Scholar 

  • Nagley, P., Sriprakash, K.S., Rytka, J., Choo, K.B., Trembath, M.K., Lukins, H.B., Linnane, A.W.: Physical mapping of genetic markers in the yeast mitochondrial genome. In: The genetic function of mitochondrial DNA (Saccone, C. and Kroon, A.M., eds.), pp. 231–242. Amsterdam: North-Holland 1976

    Google Scholar 

  • Perlman, P.S., Birky, Jr., C.W.: Mitochondrial genetics in bakers' yeast: A molecular mechanism for recombinational polarity and suppressiveness. Proc. nat. Acad. Sci. (Wash.) 71, 4612–4616 (1974)

    Google Scholar 

  • Prunell, A., Bernardi, G.: The mitochondrial genome of wild-type yeast cells. VI. Genome organization. J.molec. Biol. 110, 53–74 (1977)

    Google Scholar 

  • Prunell, A., Kopecka, H., Strauss, F., Bernardi, G.: The mitochondrial genome of wild-type yeast cells. V. Genome evolution. J. molec. Biol. 110, 17–52 (1977)

    Google Scholar 

  • Rabinowitz, M., Jakovcic, S., Martin, N., Hendler, F., Halbreich, A., Lewin, A., Morimoto, R.: Transcription and organization of yeast mitochondrial DNA. In: The genetic function of mitochondrial DNA (Saccone, C. and Kroon, A.M., eds.), pp. 219–230. Amsterdam: North-Holland 1976

    Google Scholar 

  • Roberts, R.J., Myers, P.A., Morrison, A., Murray, K.: A specific endonuclease from Haemophilus haemolyticus. J. molec. Biol. 103, 199–208 (1976)

    Google Scholar 

  • Sanders, J.P.M., Borst, P.: The organization of genes in yeast mitochondrial DNA. IV. Analysis of (dA·dT) clusters in yeast mitochondrial DNA by poly(U)-Sephadex chromatography. Molec. gen. Genet. 157, 263–269 (1977)

    Google Scholar 

  • Sanders, J.P.M., Borst, P., Weijers, P.J.: The organization of genes in yeast mitochondrial DNA. II. The physical map of EcoRI and HindII+III fragments. Molec. gen. Genet. 143, 53–64 (1975b)

    Google Scholar 

  • Sanders, J.P.M., Flavell, R.A., Borst, P., Mol, J.N.M.: Nature of the base sequence conserved in the mitochondrial DNA of a low-density petite. Biochim. biophys. Acta (Amst.) 312, 441–457 (1973)

    Google Scholar 

  • Sanders, J.P.M., Heyting, C., Borst, P.: The organization of genes in yeast mitochondrial DNA. I. The genes for large and small ribosomal RNA are far apart. Biochem. biophys. Res. Commun. 65, 699–707 (1975a)

    Google Scholar 

  • Sanders, J.P.M., Heyting, C., Borst, P.: The variability of the mitochondrial genome of Saccharomyces strains. In: Genetics and biogenesis of chloroplasts and mitochondria (Bücher, Th., Neupert, W., Sebald, W. and Werner, S., eds.), pp. 511–517. Amsterdam: North-Holland 1976b

    Google Scholar 

  • Sanders, J.P.M., Heyting, C., DiFranco, A., Borst, P., Slonimski, P.P.: The organization of genes in yeast mitochondrial DNA. In: The genetic function of mitochondrial DNA (Saccone, C. and Kroon, A.M., eds.), pp. 259–272. Amsterdam: North-Holland 1976a

    Google Scholar 

  • Sanders, J.P.M., Weijers, P.J., Groot, G.S.P., Borst, P.: Properties of mitochondrial DNA from Kluyveromyces lactis. Biochim. biophys. Acta (Amst.) 374, 136–144 (1974)

    Google Scholar 

  • Slonimski, P.P., Tzagoloff, A.: Localization in yeast mitochondrial DNA of mutations expressed in a deficiency of cytochrome oxidase and/or coenzyme QH2-cytochrome c reductase. Europ. J. Biochem. 61, 27–41 (1976)

    Google Scholar 

  • Smith, H.O., Nathans, D.: A suggested nomenclature for bacterial host modification and restriction systems and their enzymes. J. molec. Biol. 81, 419–423 (1973)

    Google Scholar 

  • Southern, E.M.: Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. molec. Biol. 98, 503–517 (1975)

    Google Scholar 

  • Streeck, R.E., Philippsen, P., Zachau, H.G.: Cleavage of small bacteriophage and plasmid DNAs by restriction endonucleases. Europ. J. Biochem. 45, 489–499 (1974)

    Google Scholar 

  • Takanami, M.: Restriction endonucleases AP, GA and H-I from three Hemophilus strains. In: DNA replication (Wickner, R.B., ed.), pp. 113–149. New York: Marcel Dekker 1974

    Google Scholar 

  • Thomas, M., Davis, R.W.: Studies on the cleavage of bacteriophage lambda DNA with EcoRI restriction endonuclease. J. molec. Biol. 91, 315–328 (1975)

    Google Scholar 

  • Thuring, R.W.J., Sanders, J.P.M., Borst, P.: A freeze-squeeze method for recovering long DNA from agarose gels. Anal. Biochem. 66, 213–220 (1975)

    Google Scholar 

  • Tzagoloff, A., Foury, F., Akai, A.: Resolution of the mitochondrial genome. In: The genetic function of mitochondrial DNA (Saccone, C. and Kroon, A.M., eds.), pp. 155–161. Amsterdam: North-Holland 1976

    Google Scholar 

  • Van Ommen, G.J.B., Groot, G.S.P., Borst, P.: Fine-structure physical mapping of 4S RNA genes on mitochondrial DNA of Saccharomyces cerevisiae. Molec. gen. Genet. 154, 255–262 (1977)

    Google Scholar 

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Communicated by F. Kaudewitz

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Sanders, J.P.M., Heyting, C., Verbeet, M.P. et al. The organization of gene in yeast mitochondrial DNA. Molec. Gen. Genet. 157, 239–261 (1977). https://doi.org/10.1007/BF00268660

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