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Mutations that overcome plasmid-mediated relaxation affect (p)ppGpp

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Summary

A recombinant plasmid, pMY3, was constructed in this laboratory to express the amber suppressor allele, Su+7, of the tRNATrp gene from E. coli (Yarus, 1979a). This plasmid also relaxes control of the synthesis of all stable RNA species in its host cell after amino acid deprivation. Guanosine penta and tetra-phosphate (MSII and MSI) concentrations are reduced to about one-half the levels achieved by starving the host cells carrying the cloning vehicle (pMB9) alone.

We now show that the relaxation conferred on cells carrying pMY3 can be overcome by at least three different missense mutations at the chromosomal spoT locus. In these stringent, plasmid-carrying strains, the ppGpp levels attained during starvation are equivalent to or higher than that of the host cell carrying the vehicle alone.

In vitro mutagenesis of the relaxing plasmid with EMS, followed by transformation and screening for plasmid-bearing stringent cells, yielded four stringent revertants of the relaxing locus. Cells carrying these mutants plasmids all have normal stringent responses to amino acid starvation, and again, elevate (p)ppGpp levels equal to or greater than 80% LS286 (pMB9) levels.

Despite pMY3′s modest effect on its host's MSI levels during the steady state of starvation, an obvious correlation exists between the concentration of that nucleotide and the host's ability to respond stringently. We therefore believe that the plasmid intervenes in MS metabolism. Measurements of the in vivo rates of decay of MSI and MSII after reversal of isoleucine starvation show that pMY3 has no effect on those reactions. The most likely mechanism of plasmid action is therefore inhibition of MS synthesis.

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Abbreviations

MSI:

ppGpp

MSII:

pppGpp

EMS:

ethyl methane sulfonate

TCA:

trichloroacetic acid

References

  • Breeden, L., Yarus, M., Cline, S.: A cloned suppressor tRNA gene relaxes stringent control. Mol. Gen. Genet. 179, 125–133 (1980)

    Google Scholar 

  • Cashel, M., Gallant, J.: Control of RNA synthesis in E. coli. I. Amino acid dependence of the synthesis of substrates of RNA polymerase. J. Mol. Biol. 34, 317–330 (1968)

    Google Scholar 

  • Cashel, M., Gallant, J.: Two compounds implicated in the function of the RC gene of E. coli. Nature 221, 838–841 (1969)

    Google Scholar 

  • Dennis, P.P.: Influence of the stringent control system on the transcription of ribosomal ribonucleic acid and ribosomal protein genes in E. coli. J. Bacteriol. 129, 580–588 (1977)

    Google Scholar 

  • Fast, R., Sköld, R.: Biochemical mechanism of uracil uptake regulation in E. coli B. J. Biol. Chem. 252, 7620–7624 (1977)

    Google Scholar 

  • Fiil, N.P., Meyenburg, K. von, Friesen, J.D.: Accumulation and turnover of guanosine tetraphosphate in E. coli. J. Mol. Biol. 71, 769–783 (1972)

    Google Scholar 

  • Fiil, N.P., Mortensen, U., Friesen, J.D.: Genes involved in magic spot metabolism. In: Alfred Benzon Symposium IX. Control of ribosome synthesis. (N.O. Kjeldgaard and O. Maaløe, ed.) pp. 437–446. Copenhagen: Munksgaard 1976

    Google Scholar 

  • Fiil, N.P., Willumsen, B.M., Friesen, J.D., Meyenburg, K. von: Interaction of alleles of the relA, relC and spoT genes in E. coli: Analysis of the interconversion of GTP, ppGpp and pppGpp. Mol. Gen. Genet. 150, 87–101 (1977)

    Google Scholar 

  • Gynheung, A., Justesen, J., Watson, R.J., Friesen, J.D.: Cloning the spoT gene of E. coli: Identification of the spoT gene product. J. Bact. 137, 1100–1110 (1979)

    Google Scholar 

  • Haseltine, W.A., Block, R.: Synthesis of guanosine tetra- and pentaphosphate requires the presence of a codon-specific, uncharged transfer ribonucleic acid in the acceptor site of the ribosomes. Proc. Natl. Acad. Sci. USA 70, 1564–1568 (1973)

    Google Scholar 

  • Laffler, T., Gallant, J.: SpoT: A new genetic locus involved in the stringen response in E. coli. Cell 1, 27–30 (1974)

    Google Scholar 

  • Lindahl, L., Post, L., Nomura, M.: DNA dependent in vitro synthesis of ribosomal proteins, protein elongation factors and RNA polymerase subunit α: Inhibition by ppGpp. Cell 9, 439–448 (1976)

    Google Scholar 

  • Maaløe, O.: Regulation of the protein-synthesizing machinery-ribosomes, tRNA, factors and so on. In: Biological regulation and development. Vol. I. Gene expression. (R.F. Goldberger, ed.) pp. 487–542. New York: Plenum Press 1979

    Google Scholar 

  • Miller, J.: In: Experiments in molecular genetics, pp. 431–435. New York: Cold Spring Harbor Laboratory 1972

    Google Scholar 

  • Nierlich, D.P.: Amino acid control over RNA synthesis: A reevaluation. Proc. Natl. Acad. Sci. USA 60, 1345–1351 (1968)

    Google Scholar 

  • Nierlich, D.P.: Regulation of bacterial growth, RNA and protein synthesis. Ann. Rev. Microbiol. 32, 393–432 (1978)

    Google Scholar 

  • Nierlich, D.P., Vielmetter, W.: Kinetic studies of ribonucleotide precursor pools and ribonucleic acid synthesis. J. Mol. Biol. 32, 135–147 (1968)

    Google Scholar 

  • Pao, C.C., Gallant, J.: A new nucleotide involved in the stringent response in E. coli. J. Biol. Chem. 254, 688–692 (1979)

    Google Scholar 

  • Parker, J., Watson, R.J., Friesen, J.D., Fiil, N.P.: A relaxed mutant with an altered ribosomal protein L11. Mol. Gen. Genet. 144, 111–114 (1976)

    Google Scholar 

  • Reiness, G., Yang, H.-L., Zubay, G., Cashel, M.: Effects of guanosine tetraphosphate on cell-free synthesis of Escherichia coli ribosomal RNA and other gene products. Proc. Natl. Acad. Sci. USA 72, 2881–2885 (1975)

    Google Scholar 

  • Schleif, R.: Control of production of ribosomal protein. J. Mol. Biol. 27, 41–55 (1967)

    Google Scholar 

  • Somerville, C.R., Ahmed, A.: Mutants of E. coli defective in the degradation of guanosine 5′-triphosphate, 3′-diphosphate (pppGpp). Mol. Gen. Genet. 169, 315–323 (1979)

    Google Scholar 

  • Sprinzl, M., Wagner, T., Lorenz, S., Erdmann, V.A.: Regions of tRNA important for binding to the ribosomal A and P sites. Biochemistry 15, 3031–3039 (1976)

    Google Scholar 

  • Wensink, P.C., Finnegan, D.J., Donelson, J.E., Hogness, D.S.: A system for mapping Drosophila melanogaster. Cell 3, 315–325 (1974)

    Google Scholar 

  • Yarus, M., Knowlton, R., Soll, L.: Aminoacylation of the ambivalent Su+7 amber suppressor tRNA. In: Nucleic acid-protein recognition. (H.J. Vogel, ed.) pp. 391–408. New York. Academic Press 1977

    Google Scholar 

  • Yarus, M.: Isolation and properties of a plasmid which expresses the E. coli Su+7 amber suppressor tRNA gene. Mol. Gen. Genet. 170, 291–298 (1979a)

    Google Scholar 

  • Yarus, M., Eisenberg, S.P., Soll, L.: The structure of the DNA containing the E. coli tRNATry gene. Mol. Gen. Genet. 170, 299–308 (1979b)

    Google Scholar 

  • Yarus, M., Cline, S.W.: The structure of the Ø80d3ilv+su+7 transducing phage and the origin of its Su+7 tRNA-gene containing fragment. Mol. Gen. Genet. 170, 283–289 (1979c)

    Google Scholar 

  • Yarus, M.: Relaxation of stable RNA synthesis by a plasmid-borne locus. Mol. Gen. Genet. 170, 309–317 (1979d)

    Google Scholar 

  • Zwaig, N., Lin, E.C.C.: A method for isolating mutants resistant to catabolite repression. Biochem. Biophys. Res. Commun. 22, 414–418 (1966)

    Google Scholar 

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Communicated by L. Lerman

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Breeden, L., Yarus, M. Mutations that overcome plasmid-mediated relaxation affect (p)ppGpp. Molec. Gen. Genet. 179, 119–124 (1980). https://doi.org/10.1007/BF00268453

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