Skip to main content
Log in

New Escherichia coli gyrA and gyrB mutations which have a graded effect on DNA supercoiling

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

We isolated new gyrA and gyrB mutations in Escherichia coli which have a graded effect on DNA supercoiling. The mutants, selected respectively for resistance to nalidixic acid and coumermycin, were sorted by means of a rapid in vivo assay of DNA gyrase activity (Aleixandre and Blanco 1987). Cells carrying a gyrB (Cour) mutation usually showed a decrease in DNA supercoiling, which would indicate a reduction in gyrase activity. In contrast, most of the gyrA (Nalr) mutations had no significant effect on DNA supercoiling. Moreover, they conferred a high level of resistance to nalidixic acid and other quinolones, thus being similar to the gyrA(Nalr) mutants currently used. We also detected rare gyrA mutants showing a reduction in DNA gyrase activity. These mutants were, in addition, resistant to only low concentrations of quinolones, which allowed us to use the phenotype of partial quinolone resistance as an indicator to score gyrA mutations affecting DNA supercoiling. When gyrB mutations were introduced into the gyrA mutants, these became more sensitive to quinolones and a decrease in supercoiling was observed. Moreover, the topA10 mutation sensitized gyrA(Nalr) cells to quinolones. We conclude therefore that the GyrA-dependent quinolone resistance is diminished as a consequence of the reduction either in topoisomerase I or gyrase activities.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Aleixandre V, Blanco M (1987) Heterogeneity in the level of ampicillin resistance conferred by pBR322 derivatives with different DNA supercoiling. Mol Gen Genet 209:56–60

    Google Scholar 

  • Bachmann BJ (1972) Pedigrees of some mutant strains of Escherichia coli K12. Bacteriol Rev 36:525–557

    Google Scholar 

  • DiNardo S, Voelkel KA, Sternglanz R, Reynolds AE, Wright A (1982) Escherichia coli DNA topoisomerase I mutants have compensatory mutations in DNA gyrase genes. Cell 31:43–51

    Google Scholar 

  • Drlica K (1984) Biology of bacterial deoxyribonucleic acid topoisomerases. Microbiol Rev 48:273–289

    Google Scholar 

  • Drlica K, Franco RJ (1988) Inhibitors of DNA topoisomerases. Biochemistry 27:2253–2259

    Google Scholar 

  • Gellert M (1981) DNA topoisomerases. Annu Rev Biochem 50:879–910

    Google Scholar 

  • Gellert M, O'Dea MH, Itoh T, Tomizawa J (1976) Novobiocin and coumermycin inhibit DNA supercoiling catalysed by DNA gyrase. Proc Natl Acad Sci USA 73:4474–4478

    Google Scholar 

  • Gellert M, Mizuuchi K, O'Dea MH, Itoh T, Tomizawa J (1977) Nalidixic acid resistance: a second genetic character involved in DNA gyrase activity. Proc Natl Acad Sci USA 74:4772–4776

    Google Scholar 

  • Gellert M, Menzel M, Mizuuchi K, O'Dea MH, Friedman D (1983) Regulation of DNA supercoiling in E. coli. Cold Spring Harbor Symp Quant Biol 47:763–767

    Google Scholar 

  • Kreuzer KN, McEntee K, Geballe AP, Cozzarelli NR (1978) Lambda transducing phages for the nalA gene of Escherichia coli and conditional nalA mutations. Mol Gen Genet 167:129–137

    Google Scholar 

  • Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning, a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Habor, New York

    Google Scholar 

  • Pruss GJ, Manes SH, Drlica K (1982) Escherichia coli DNA topoisomerase I mutants: increased supercoiling is corrected by mutations near gyrase genes. Cell 31:35–42

    Google Scholar 

  • Pruss GJ, Franco RJ, Chevalier SG, Manes SH, Drlica K (1986) Effects of DNA gyrase inhibitors in Escherichia coli topoisomerase I mutants. J Bacteriol 168:276–282

    Google Scholar 

  • Raji A, Zabel DJ, Laufer CS, Depew RE (1985) Genetic analysis of mutations that compensate for loss of Escherichia coli DNA topoisomerase I. J Bacteriol 162:1173–1179

    Google Scholar 

  • Richardson SMH, Higgins CF, Lilley DMJ (1984) The genetic control of DNA supercoiling in Salmonella typhimurium. EMBO J 3:1745–1752

    Google Scholar 

  • Shen LL, Pernet AG (1985) Mechanism of inhibition of DNA gyrase by analogues of nalidixic acid: the target of the drugs is DNA. Proc Natl Acad Sci USA 82:307–311

    Google Scholar 

  • Shen LL, Baranowski J, Pernet AG (1989a) Mechanism of inhibition of DNA gyrase by quinolone antibacterials: specificity and cooperativity of drug binding to DNA. Biochemistry 28:3879–3885

    Google Scholar 

  • Shen LL, Mitscher LA, Sharma PN, O'Donnell TJ, Chu DWT, Cooper CS, Rosen T, Pernet AG (1989b) Mechanism of inhibition of DNA gyrase by quinolone antibacterials: a cooperative drug-DNA binding model. Biochemistry 28:3886–3894

    Google Scholar 

  • Steck TR, Pruss GJ, Manes SH, Burg L, Drlica K (1984) DNA supercoiling in gyrase mutants. J Bacteriol 158:397–403

    Google Scholar 

  • Sternglanz R, DiNardo S, Voelkel KA, Nishimura Y, Hirota Y, Becherer K, Zumstein L, Wang JC (1981) Mutations in the gene coding for Escherichia coli DNA topoisomerase I affect transcription and transposition. Proc Natl Acad Sci USA 78:2747–2751

    Google Scholar 

  • Sugino A, Peebles CL, Kreuzer KN, Cozzarelli NR (1977) Mechanism of action of nalidixic acid: purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme. Proc Natl Acad Sci USA 74:4767–4771

    Google Scholar 

  • Wang JC (1985) DNA topoisomerases. Annu Rev Biochem 54:665–697

    Google Scholar 

  • Yoshida H, Kojima T, Yamagishi J-I, Nakamura S (1988) Quinolone-resistant mutations of the gyrA gene of Escherichia coli. Mol Gen Genet 211:1–7

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by W. Arber

Rights and permissions

Reprints and permissions

About this article

Cite this article

Aleixandre, V., Urios, A., Herrera, G. et al. New Escherichia coli gyrA and gyrB mutations which have a graded effect on DNA supercoiling. Molec. Gen. Genet. 219, 306–312 (1989). https://doi.org/10.1007/BF00261192

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00261192

Key words

Navigation