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In vivo selected promoter and ribosome binding site up-mutations: Demonstration that the Escherichia coli bla promoter and a Shine-Dalgarno region with low complementarity to the 16 S ribosomal RNA function in Bacillus subtilis

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Summary

We have constructed a plasmid, pQS1, in which a mouse dihydrofolate reductase (5,6,7,8-tetrahydrofolate:NADP:oxidoreductase; EC 1.5.1.3; DHFR) cDNA is inserted in the unique PstI site of a gram-positive/gram-negative shuttle vector derived from pBR322. The cDNA is expressed under the control of the bla promoter, which, like most gram-negative bacterial genes, is considered not to be expressed in Bacillus subtilis, and its coding sequence is translated from a polycistronic message. We have selected in vivo and studied, in Escherichia coli and B. subtilis, expression mutants with promoter and ribosome binding site sequence mutations. One promoter mutation changes the third nucleotide of the −35 region from a C to a G. As expected, this substitution results in increased transcriptional activity in E. coli. In B. subtilis, this mutation induces the accumulation not only of a low but significant amount of dhfr mRNA but also of DHFR, demonstrating that binding strengths with a free energy as low as −9.4 kcal/mol are sufficient to promote ribosome binding in B. subtilis. The association of the promoter mutation (C-G) with a mutation which creates a strong B. subtilis ribosome binding site (−21 kcal/mol) results in the accumulation of a large amount of dhfr mRNA. This demonstrates the importance of having an efficient ribosome binding site in the evaluation of promoter function: for example, with this strong ribosome binding site we can show that the wild-type bla promoter is recognized by the B. subtilis transcription machinery.

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References

  • Belasco JG, Nilsson G, von Gabain A, Cohen SN (1986) The stability of Escherichia coli gene transcripts is dependent on determinants localized to specific mRNA segments. Cell 46:245–251

    Google Scholar 

  • Biggin MD, Gibson TS, Hong GE (1983) Buffer gradient gels and 35S as an aid to rapid DNA sequence determination. Proc Natl Acad Sci USA 80:3963–3965

    Google Scholar 

  • Borer PN, Dengler B, Tinoco I, Uhlenbeck OC (1974) Stability of ribonucleic acid double-stranded helices. J Mol Biol 86:843–853

    Google Scholar 

  • Boyer HV, Roulland-Dussoix D (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol 41:459–472

    Google Scholar 

  • Brosius J, Cate RL, Perlmutter AP (1982) Precise location of two promoters for the β-lactamase gene of pBR322. S1 mapping of ribonucleic acid isolated from Escherichia coli or synthesized in vitro. J Biol Chem 257:9205–9210

    Google Scholar 

  • Chang ACY, Erlich HA, Gunsalus RP, Nunberg JH, Kaufman RJ, Schimke RT, Cohen SN (1980) Initiation of protein synthesis in bacteria at a translational start codon of mammalian cDNA: effects of the preceding nucleotide sequence. Proc Natl Acad Sci USA 77:1442–1446

    Google Scholar 

  • Cully DF, Garro AJ (1985) Nucleotide sequence of the immunity region of Bacillus subtilis bacteriophage ϕ 105: identification of the repressor gene and its mRNA and protein products. Gene 38:153–164

    Google Scholar 

  • Dohet C, Wagner R, Radman M (1986) Methyl-directed repair of frameshift mutations in heteroduplex DNA. Proc Natl Acad Sci USA 83:3395–3397

    Google Scholar 

  • Doi RH, Wang LF (1986) Multiple procaryotic ribonucleic acid polymerase sigma factors. Microbiol Rev 50:227–243

    Google Scholar 

  • Ehrlich SD, Jupp S, Niaudet B, Goze A (1978) Bacillus subtilis as a host for DNA cloning. In: Boyer HW, Nicosia S (eds) Genetic Engineering. Elsevier/North-Holland Biomedical Press, New York, pp 25–32

    Google Scholar 

  • Fujita Y, Fujita T (1986) Identification and nucleotide sequence of the promoter region of the Bacillus subtilis gluconate operon. Nucleic Acids Res 14:1237–1252

    Google Scholar 

  • Gitt MA, Wang LF, Doi RH (1985) A strong sequence homology exists between the major RNA polymerase factors of Bacillus subtilis and Escherichia coli. J Biol Chem 260:7178–7185

    Google Scholar 

  • Grange T, Kunst F, Thillet J, Ribadeau-Dumas B, Mousseron S, Hung A, Jami J, Pictet R (1984) Expression of the mouse dihydrofolate reductase cDNA in B. subtilis: a system to select mutant cDNAs coding for methotrexate resistant enzymes. Nucleic Acids Res 12:3585–3601

    Google Scholar 

  • Harley CB, Reynolds RP (1986) Analysis of Escherichia coli promoter sequences. Nucleic Acid Res 15:2343–2361

    Google Scholar 

  • Hung A, Pictet R (1989) Similarities between the regulatory sequences of the unrelated tetracycline genes of pBR322 and Tn10. FEBS Lett 245:57–60

    Google Scholar 

  • Kreft J, Burger KJ, Goebel W (1983) Expression of antibiotic resistance genes from Escherichia coli in Bacillus subtilis. Mol Gen Genet 190:384–389

    Google Scholar 

  • Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685

    PubMed  Google Scholar 

  • Lepesant J-A, Kunst F, Lepesant-Kejzlarova J, Dedonder R (1972) Chromosomal location of mutations affecting sucrose metabolism in Bacillus subtilis marburg. Mol Gen Genet 118:135–160

    Google Scholar 

  • Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Maxam AM, Gilbert W (1980) Sequencing end-labeled DNA with base-specific chemical cleavage. Methods Enzymol 65:499–560

    Google Scholar 

  • McLaughlin JR, Murray CL, Rabinowitz JC (1981) Unique features in the ribosome binding site sequence of the Gram-positive Staphylococcus aureus β-lactamase gene. J Biol Chem 256:11283–11291

    Google Scholar 

  • Messing J (1983) New M13 vectors for cloning. Methods Enzymol 101:20–78

    Article  CAS  PubMed  Google Scholar 

  • Moran Jr CP, Lang N, Le Grice SFJ, Lee G, Stephens M, Sonensheim AL, Pero J, Losick R (1982) Nucleotide sequences that signal the initiation of transcription and translation in Bacillus subtilis. Mol Gen Genet 186:339–346

    Google Scholar 

  • Murray CL, Rabinowitz JC (1982) Nucleotide sequences of transcription and translation initiation regions in Bacillus phage 29 early genes. J Biol Chem 257:1053–1062

    Google Scholar 

  • Ohmura K, Yamazaki H, Takeichi Y, Nakayama A, Otozai K, Yamane K, Yamasaki M, Tamura G (1983) Nucleotide sequence of the promoter and NH2-terminal signal peptide region of Bacillus subtilis α-amylase gene cloned in pUB110. Biochem Biophys Res Commun 112:678–683

    Google Scholar 

  • Peschke U, Beuck V, Bujard H, Gentz R, Le Grice S (1985) Efficient utilization of Escherichia coli transcriptional signals in Bacillus subtilis. J Mol Biol 186:547–555

    Google Scholar 

  • Primose SB, Ehrlich SD (1981) Isolation of plasmid deletion mutants and study of their instability. Plasmid 6:193–201

    Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    CAS  PubMed  Google Scholar 

  • Shimotsu H, Henner DJ (1984) Characterization of the Bacillus subtilis tryptophane promoter region. Proc Natl Acad Sci USA 81:6315–6319

    Google Scholar 

  • Sollner-Webb B, Reeder RH (1979) The nucleotide sequence of the initiation and termination sites for ribosomal RNA transcription in X. laevis. Cell 18:485–499

    Google Scholar 

  • Spizizen J (1958) Transformation of biochemically deficient strains of Bacillus subtilis by deoxyribonucleate. Proc Natl Acad Sci USA 44:1072–1078

    Google Scholar 

  • Sutcliffe JG (1978) Complete nucleotide sequence of the Escherichia coli plasmid pBR322. Cold Spring Harbor Symp Quant Biol 43:77–90

    Google Scholar 

  • Thillet J, Absil J, Stone S, Pictet R (1988) Site directed mutagenesis of mouse dihydrofolate reductase: mutants with increased resistance to methotrexate and trimethoprim. J Biol Chem 263:12500–12508

    Google Scholar 

  • Tinoco I, Borer PN, Dengler B, Levine MD, Uhlenbeck OC (1973) Improved estimation of secondary structure in ribonucleic acids. Nature New Biol 246:40–41

    Google Scholar 

  • Wang SL, Doi RH (1982) Peptide mapping of Bacillus subtilis RNA polymerase factors and core-associated polypeptides. J Biol Chem 257:11392–11936

    Google Scholar 

  • Yamazaki A, Ohmura K, Nakayama A, Takeichi Y, Otozai I, Yamasaki M, Tamura G, Yamane K (1983) α-Amylase genes (amyR2 and amyE +) from an α-amylase-hyperproducing Bacillus subtilis strain: molecular cloning and nucleotide sequences. J Bacteriol 156:327–337

    Google Scholar 

  • Zoller M, Smith M (1983) Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors. Methods Enzymol 100:468–500

    Google Scholar 

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Communicated by H. Hennecke

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Hung, A., Thillet, J. & Pictet, R. In vivo selected promoter and ribosome binding site up-mutations: Demonstration that the Escherichia coli bla promoter and a Shine-Dalgarno region with low complementarity to the 16 S ribosomal RNA function in Bacillus subtilis . Molec. Gen. Genet. 219, 129–136 (1989). https://doi.org/10.1007/BF00261168

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