Skip to main content
Log in

Identification of a promoter dependent on NifA and σ54 upstream ofnifH inAzospirillum lipoferum

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

Southern hybridization experiments strongly indicate that the regulatory region of theAzospirillum lipoferum nifH gene is located on a cloned 1.1 kbBamHI-XhoI restriction fragment. By cloning this fragment into a promoter-probe plasmid inEscherichia coli, a promoter was identified oriented towards thenifH gene. Using a set of several bacterial strains and plasmids, both NifA and the alternative σ factor, σ54, fromKlebsiella pneumoniae were shown to be required for the induction of the assumednifH promoter in this particular heterologous system. However, NtrC fromK. pneumoniae did not stimulate this promoter. No other promoter activity was detected in the direction opposite to the identified promoter, indicating that the transcription of the adjacentnifJ gene cannot be initiated from the 1.1 kbBamHI-XhoI fragment. Thus, the genesnifH andnifJ inA. lipoferum cannot be oriented divergently, in contrast to the situation in several other nitrogen-fixing bacteria.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Arnold W, Rump A, Klipp W, Priefer UB, Pühler W (1988) Nucleotide sequence of a 24,206-base pair DNA fragment carrying the entire nitrogen fixation gene cluster ofKlebsiella pneumoniae. J Mol Biol 203:715–738

    Article  PubMed  CAS  Google Scholar 

  • Boyer HW, Roulland-Dussoix D (1969) A complementation analysis of the restriction and modification of DNA inE. coli. J Mol Biol 41:459–472

    Article  PubMed  CAS  Google Scholar 

  • Buchanan-Wollaston V, Cannon MC, Beynon JL, Cannon FC (1981) Role of thenifA gene product in the regulation ofnif expression inKlebsiella pneumoniae. Nature 294:776–778

    Article  PubMed  CAS  Google Scholar 

  • Buck M, Miller S, Drummond M, Dixon R (1986) Upstream activator sequences are present in the promoters of nitrogen fixation genes. Nature 320:374–378

    Article  CAS  Google Scholar 

  • Cohen SN, Chang ACX, Hsu L (1972) Nonchromosomal antibiotic resistance in bacteria: Genetic transformation ofEscherichia coli by R-factor DNA. Proc Natl Acad Sci USA 69:2110–2114

    Article  PubMed  CAS  Google Scholar 

  • Fahsold R, Singh M, Klingmüller W (1985) Cosmid cloning of the nitrogenase structural genes ofAzospirillum lipoferum. In: Klingmüller W (ed) Azospirillum III: Genetics, physiology, ecology. Springer, Berlin Heidelberg New York Tokyo, pp 30–40

    Google Scholar 

  • Fani R, Allotta G, Bazzicalupo M, Ricci F, Schipani C, Polsinelli M (1989) Nucleotide sequence of the gene encoding the nitrogenase iron protein (nifH) ofAzospirillum brasilense and identification of a region controllingnifH transcription. Mol Gen Genet 220:81–87

    Article  PubMed  CAS  Google Scholar 

  • Fu H-A, Fitzmaurice WP, Lehmann LJ, Roberts GP, Burris RH (1988) Regulation of nitrogenase activity in azospirilla, herbaspirilla and aetobacter and cloning ofdraG- anddraT-homologous genes ofA. lipoferum SpBr17. In: Bothe H, de Bruijn FL, Newton WE (eds) Nitrogen fixation: Hundred Years After. Gustav Fischer, Stuttgart, p 36

    Google Scholar 

  • Fu H-A, Fitzmaurice WP, Roberts GP, Burris RH (1990) Cloning and expression ofdraTG genes fromAzospirillum lipoferum. Gene 86:95–98

    Article  PubMed  CAS  Google Scholar 

  • Galimand M, Perroud B, Delorme F, Paquelin A, Vieille C, Bozouklian H, Elmerich C (1989) Identification of DNA regions homologous to nitrogen fixation genesnifE,nifUS andfixABC inAzospirillum brasilense Sp7. J Gen Microbiol 135:1047–1059

    PubMed  CAS  Google Scholar 

  • Hartmann A, Fu H, Burris RH (1988) Influence of amino acids on nitrogen fixation ability and growth ofAzospirillum spp. Appl Environ Microbiol 54:87–93

    PubMed  CAS  Google Scholar 

  • Kennedy C, Drummond MH (1985) Use of clonednif regulatory elements fromKlebsiella pneumoniae to examinenif regulation inAzotobacter vinelandii. J Gen Microbiol 131:1787–1795

    CAS  Google Scholar 

  • Kreutzer R, Singh M, Klingmüller W (1989) Identification and characterization of thenifH andnifJ promoter regions located on thenif-plasmid pEA3 ofEnterobacter agglomerans 333. Gene 78:101–109

    Article  PubMed  CAS  Google Scholar 

  • Kustu S, Santero E, Keener J, Pophan D, Weiss D (1989) Expression of σ54 (ntrA)-dependent genes is probably united by a common mechanism. Microbiol Rev 53:367–376

    PubMed  CAS  Google Scholar 

  • Ludden PW, Roberts GP, Lowery RG, Fitzmaurice WP, Saari LL, Lehman L, Lies D, Woehle D, Wirt H, Murrell SA, Pope MR, Kanemoto RH (1988) Regulation of nitrogenase activity by reversible ADP-ribosylation of dinitrogenase reductase. In: Bothe H, de Bruijn FL, Newton WE (eds) Nitrogen Fixation: Hundred Years After. Gustav Fischer, Stuttgart, pp 157–162

    Google Scholar 

  • MacNeil T, Roberts GP, MacNeil D, Tyler B (1982) The products ofglnL andglnG are bifunctional regulatory proteins. Mol Gen Genet 188:325–333

    Article  PubMed  CAS  Google Scholar 

  • Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York

    Google Scholar 

  • Merrick MJ (1983) Nitrogen control of thenif regulon inKlebsiella pneumoniae: involvement of thentrA gene and analogies betweenntrC andnifA. EMBO J 2:39–44

    PubMed  CAS  Google Scholar 

  • Miller JH (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York

    Google Scholar 

  • Pedrosa FO, Yates MG (1984) Regulation of nitrogen fixation (nif) genes ofAzospirillum brasilense bynifA andntr (gln) type gene products. FEMS Microbiol Lett 23:95–101

    Article  CAS  Google Scholar 

  • Riedel GE, Ausubel FM, Cannon FC (1979) Physical map of chromosomal nitrogen fixation (nif) genes ofKlebsiella pneumoniae. Proc Natl Acad Sci USA 76:2866–2870

    Article  PubMed  CAS  Google Scholar 

  • Schneider K, Beck CF (1986) Promoter-probe vectors for the analysis of divergently arranged promoters. Gene 42:37–48

    Article  PubMed  CAS  Google Scholar 

  • Singh M, Kreutzer R, Acker G, Klingmüller W (1988) Localization and physical mapping of a plasmid-borne 23 kbnif-gene cluster fromEnterobacter agglomerans showing homology to the entirenif-cluster ofKlebsiella pneumoniae M5a1. Plasmid 19:1–12

    Article  PubMed  CAS  Google Scholar 

  • Singh M, Tripathi AK, Klingmüller W (1989) Identification of a regulatorynifA type gene and physical mapping of cloned newnif regions ofAzospirillum brasilense. Mol Gen Genet 219:235–240

    Article  PubMed  CAS  Google Scholar 

  • Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503–517

    Article  PubMed  CAS  Google Scholar 

  • Sundaresan V, Ow DW, Ausubel FM (1983) Activation ofKlebsiella pneumoniae andRhizobium mehloti nitrogenase promoters bygln (ntr) regulatory proteins. Proc Natl Acad Sci USA 80:4030–4034

    Article  PubMed  CAS  Google Scholar 

  • Tarrand JJ, Krieg NR, Döbereiner J (1978) A taxonomic study of theSpirillum lipoferum group, with description of a new genus,Azospirillum gen nov and two speciesAzospirillum lipoferum (Beijerinck) comb. nov. andAzospirillum brasilense sp. nov. Can J Microbiol 24:967–980

    Article  PubMed  CAS  Google Scholar 

  • de Zamaroczy M, Delorme F, Elmerich C (1989) Regulation of transcription and promoter mapping of the structural genes for nitrogenase (nifHDK) ofAzospirillum brasilense Sp7. Mol Gen Genet 220:88–94

    PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by H. Böhme

Rights and permissions

Reprints and permissions

About this article

Cite this article

Tripathi, A.K., Kreutzer, R. & Klingmüller, W. Identification of a promoter dependent on NifA and σ54 upstream ofnifH inAzospirillum lipoferum . Molec. Gen. Genet. 227, 86–90 (1991). https://doi.org/10.1007/BF00260711

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00260711

Key words

Navigation