Summary
Brief digestion of sarcoma-180 chromatin (≤ 5%) by pancreatic DNase-I releases six non-histone proteins with Mol. wt. 21.5K, 26K, 72.5K, 77K, 90K and 120K dalton and pI values ranging from 4.7 to 12.4. The protein of Mol. wt. 77K dalton was obtained at high alkaline range of pH = 12.4. The antibodies against these proteins induce dose dependent inhibition in transcription of native chromatin. Results suggest a role of these proteins in positive control of gene transcription in sarcoma-180 cells.
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Olins AL, Olins DE: Spheroid chromatin units (γ-bodies). Science 183:330–332, 1974
McGhee JD, Felsenfeld G: Nucleosome structure. Ann Rev Biochem 49:1115–1156, 1980
Mathis D, Oudet P, Chambon P: Structure of transcribing chromatin. Progr Nucl Acid Res Mol Biol 24:1–55, 1980
Isenberg I: Histories. Ann Rev Biochem 48:159–191, 1979
Compton JL, Bellard M, Chambon P: Biochemical evidence of variability in the DNA repeat length in chromatin of higher eukaryotes. Proc Natl Acad Sci USA 73:4382–4386, 1976
Flint SJ, Weintraub HM: An altered subunit configuration associated with the actively transcribed DNA of integrated adenovirus genes. Cell 12:783–794, 1977
Gottesfeld JM, Butler PJG: Structure of transcriptionally active chromatin subunits. Nucl Acid Res 4:3155–3174, 1977
Jackson JB, Pollock JM, Rill RL: Chromatin fractionation procedure that yields nucleosomes containing near-stoichiometric amounts of high mobility group non-histone chromsomal proteins. Biochemistry 18:3739–3748, 1979
Levy WB, Connor W, Dixon GH: A subset of trout testis nucleosomes enriched in transcribed DNA sequences contain high mobility group proteins as major structural components. J Biol Chem 254:609–620, 1979
Weintraub H, Groudine M: Chromosomal subunits in active genes have an altered conformation. Science 193:848–856, 1976
Garel A, Axel R: Selective digestion of transcriptionally active ovalbumin genes from oviduct nuclei. Proc Natl Acad Sci USA 73:3966–3970, 1976
Wu C, Wong YC, Elgin SCR: The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity. Cell 16:807–814, 1979
Wu C, Bingham PM, Livac KJ, Holmgren R, Elgin SCR: The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequences. Cell 16: 797–806, 1979
Wu C: The 5'end of Drosophila heat shock genes in chromatin are hypersensitive to DNase I. Nature 286:854–860, 1980
Wu C, Gilbert W. Tissue specific exposure of chromatin structure of the 5'terminus of the rat pre-proinsulinII gene. Proc Natl Acad Sci USA 78:1577–1580, 1981
IgoKemenes T, Horz W, Zachau HG: Chromatin. Ann Rev Biochem 51:89–121, 1982
Elgin SCR: DNaseI hypersensitive sites of chromatin. Cell 27:413–415, 1981
Elgin SCR: Chromatin structure, DNA structure. Nature 300:402–403, 1982
Elgin SCR, Cartwrite IL, Fleischmann G, Lowenhaupt K, Keene MA: Cleavage reagents as probes of DNA sequence organisation and chromatin structure: Drosophila melanogaster locus 67BI. Cold Spring Harb Symp Quant Biol 47:529–538, 1982
Herbomel P, Saragosti S, Blangy D, Yaniv M: Fine structure of the origin-proximal DNaseI-hypersensitive region in wild type and EC mutant polyoma. Cell 25:651–658, 1981
Moyne G, Katinka M, Saragosti S, Chestier A, Yaniv M: Role of chromatin structure, histone acetylation, and the primary sequence of DNA in the expression of SV40 and polyoma in normal and teratocarcinoma cells. Prog Nucl Acid Res Mol Biol 26:151–167, 1981
Rösl F, Waldeck W, Sauer G: Isolation of episomal bovine papillomavirus chromatin and identification of DNaseI hypersensitive region. J Virol 46:567–574, 1983
Muskavitch MAT, Hogness DS: An expandable gene that encodes a Drosophila glue protein is not expressed in variants lacking remote upstream sequences. Cell 29:1041–1051, 1982
McGinnis W, Shermoen AW, Heemskerk J, Beckendorf SW: DNA sequence changes in an upstream DNaseI hypersensitive region and correlated with reduced gene expression. Proc Natl Acad Sci USA 80:1063–1067, 1983
Khoury G, Gruss P: Enhancer elements. Cell 33:313–314, 1983
Gluzman Y, Shen KT: Communication in Molecular Biology. Cold Spring Harbor Laboratory, New York, 1981
Lipps HJ, Erhardt P: DNaseI hypersensitivity of the terminal inverted repeat DNA sequences in the micronucleus of the ciliate Stylonychia mytilus. FEBS Letters 126:219–222, 1981
Strob U, Arp B, Wilson R: The switch region associated with immunoglobulin Cµ genes is DNaseI hypersensitive in Tlymphocytes. Nature 294:90–92, 1981
Chung SY, Folsom V, Wolley J; DNaseI hypersensitive sites in the chromatin of immunoglobulin klight chain genes. Proc Natl Acad Sci USA 80:2427–2431, 1983
Nasmyth KA: Molecular genetics of yeast mating type. Ann Rev Genet 16:439–500, 1982
McGhee JD, Wood WI, Dolan M, Engel JD, Felsenfeld GI: A 200 base pair region at the 5'end of the chicken adault β-globin gene in accessible to nuclease digestion. Cell 27:45–56, 1981
Lohr D: Chromatin structure differs between coding and upstream flanking sequences of the yeast 35S ribosomal gene. Biochemistry 22:927–934, 1983
Choudhury K, Ganguly R, Neogy RK: Influence of chromosomal proteins on interaction of adriamycin with chromatin. In J Biochem Biophys 19:301–304, 1982
Marmur J: A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218, 1961
Broek HWJV, Nooden LD, Sevall JS, Bonner J: Isolation, purification and fractionation of non-histone chromosomal proteins. Biochemistry 12:229–236, 1973
Laemmli UK: Cleavage of structural proteins during the assembly of the bacteriophage T4. Nature 227:680–685, 1970
Oakley BR, Kirsch DR, Morris NR: A simplified ultrasenstive silver stain for detecting proteins in polyacrylamide gel. Anal Biochem 105:361–363, 1980
Manley JL, Fire A, Cano A, Sharp PA, Gefter ML: DNA dependent transcription of adenovirus genes in a soluble whole cell extract. Proc Natl Acad Sci USA 77:3855–3859, 1980
Kleiman L, Huang RC: Binding of actinomycinD with calf thymus chromatin. J Mol Biol 55:503–521, 1971
Goodwin GH, Nicolas RH, Johns EW. An improved large scale fractionation of high mobility group non-histone chromatin protein. Biochim Biophys Acta 405:280–291, 1975
Einck L, Bustin M: Inhibition of transcription in somatic cells by microinjection of antibodies to chromosomal proteins. Proc Natl Acad Sci USA 80:6735–6739, 1983
Johns EW: The HMG chromsomal proteins. Academic Press, London, 1982
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Panda, C.K., Choudhury, K. & Neogy, R.K. Characterization of DNA binding proteins released from sarcoma-180 chromatin during brief digestion with DNase-I. Mol Cell Biochem 78, 101–108 (1987). https://doi.org/10.1007/BF00229684
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DOI: https://doi.org/10.1007/BF00229684