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Molecular cloning of two Solanum chacoense S-alleles and a hypothesis concerning their evolution

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Abstract

The polymerase chain reaction (PCR) has been used to clone two S-alleles (S13 and S14) from Solanum chacoense. The two alleles do not cross-hybridize on genomic Southern blots or on northern blots using stylar RNA. Although the S14 message was not detected in a stylar cDNA library prepared from mature flowers, a full-length copy of the S13 coding sequence was isolated by screening with the PCR fragment. We have analysed the sequences of the S13 cDNA and the S14 PCR fragment (60% of the mature protein coding sequence) in the context of S-RNase evolution, and propose that random point mutations may be sufficient to generate new S-alleles. Based on a phylogenetic tree composed of RNase sequences containing the conserved RNase motifs HGLWP and KHGXC, we suggest that gametophytic self-incompatibility genes are RNase genes that have acquired a new function in the gametophytic self-incompatibility system early in the evolution of flowering plants.

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References

  • Ai Y, Singh A, Coleman CE, Ioerger TR, Kheyr-Pour A, Kao T-H (1990) Self-incompatibility in Petunia inflata: isolation and characterization of cDNAs encoding three S-allele associated proteins. Sex Plant Reprod 3:130–138

    Google Scholar 

  • Altschul SF, Gish W, Miller EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410

    Article  CAS  PubMed  Google Scholar 

  • Anderson MA, McFadden GI, Bernatzky R, Atkinson A, Orpin T, Dedman H, Tregear G, Fernley R, Clarke AE (1989) Sequence variability of three alleles of the self-incompatibility gene of Nicotiana alata. Plant Cell 1:483–491

    Google Scholar 

  • Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1987) Current protocols in molecular biology. Wiley, New York

    Google Scholar 

  • Breathnach R, Chambon P (1981) Organization and expression of eucaryotic split genes coding for proteins. Ann Rev Biochem 50:349–383

    Google Scholar 

  • Cappadocia M (1990) Wild potato (Solanum chacoense Bitt). In vitro production of haploids. In: Bajaj YPS (ed) Biotechnology in agriculture and forestry 12:514–529

  • Clark AG, Kao T-H (1991) Excess nonsynonymous substitution at shared polymorphic sites among self-incompatibility alleles of Solanaceae. Proc Natl Acad Sci USA 88:9823–9827

    Google Scholar 

  • Clark KR, Okuley JJ, Collins PD, Sims TL (1990) Sequence variability and developmental expression of S-alleles in self-incompatible and pseudo-self-compatible Petunia. Plant Cell 2:815–826

    Google Scholar 

  • Dayhoff MO, Schwartz RM, Orcutt BC (1979) A model of evolutionary change in proteins. In: Dayhoff MO (ed) Atlas of protein sequence and structure, vol 5 (suppl 3). National Biomedical Research Foundation, Silver Spring, Md, p 345

    Google Scholar 

  • Ebert PR, Anderson MA, Bernatzky R, Altschuler M, Clarke AE (1989) Genetic polymorphism of self-incompatibility in flowering plants. Cell 56:255–262

    Google Scholar 

  • Goodall GJ, Filipowicz W (1989) The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing. Cell 58:473–483

    Google Scholar 

  • Hawkes JG (1990) The potato. Evolution, biodiversity and genetic resources. Belhaven Press, London

    Google Scholar 

  • Horiuchi H, Yanai K, Tagaki M, Yano K, Wakabayashi E, Sanda A, Mine S, Ohgi K, Irie M (1988) Primary structure of a base non-specific ribonuclease from Rhizopus niveus. J Biochem 103:408–418

    PubMed  Google Scholar 

  • Ide H, Kimura M, Arai M, Funatsu G (1991) The complete amino acid sequence of ribonuclease from the seeds of bitter gourd (Momordica charantia). FEBS Lett 284:161–164

    Google Scholar 

  • Inada Y, Watanabe H, Ohgi K, Irie M (1991) Isolation, characterization and primary structure of a base non-specific and adenylic acid preferential ribonuclease With higher specific activity from Tricoderma viride. J Biochem 110:896–904

    Google Scholar 

  • Ioerger TR, Gohlke JR, Xu B, Kao T-H (1991) Primary structural features of the self-incompatibility protein in Solanaceae. Sex Plant Reprod 4:81–87

    Google Scholar 

  • Jost W, Bak M, Glund K, Terpstra P, Beintema JJ (1991) Amino acid sequence of an extracellular phosphate-starvation-induced ribonuclease from cultured tomato (Lycopersicon esculentum) cells. Eur J Biochem 198:1–6

    Google Scholar 

  • Kaufmann H, Salamini F, Thompson RD (1991) Sequence variability and gene structure at the self-incompatibility locus of Solanum tuberosum. Mol Gen Genet 226:457–466

    Google Scholar 

  • Kawata Y, Sakiyama F, Tamaoki H (1988) Amino acid sequence of ribonuclease T2 from Aspergillus oryzae. Eur J Biochem 176:683–697

    Google Scholar 

  • Kheyr-Pour A, Bintrim SB, Ioerger TR, Remy R, Hammond SA, Kao T-H (1990) Sequence diversity of pistil S-proteins associated with gametophytic self-incompatibility in Nicotiana alata. Sex Plant Reprod 3:88–97

    Google Scholar 

  • Lang BF, Burger G (1990) A rapid, high resolution DNA sequencing gel system. Anal Biochem 188:176–180

    Google Scholar 

  • McClure BA, Haring V, Ebert PR, Anderson MA, Simpson RJ, Sakiyama F, Clarke AE (1989) Style self-incompatibility gene products of Nicotiana alata are ribonucleases. Nature 342:955–957

    Article  CAS  PubMed  Google Scholar 

  • McClure BA, Gray J, Anderson M, Clarke A (1990) Self-incompatibility in Nicotiana alata involves degradation of pollen RNA. Nature 347:757–760

    Google Scholar 

  • Meador J, Kennell D (1990) Cloning and sequencing the gene encoding Escherichia ribonuclease I: exact physical mapping using the genome library. Gene 95:1–7

    Google Scholar 

  • Meagher RB, Berry-Lowe S, Rice K (1989) Molecular evolution of the small subunit of ribulose bisphosphate carboxylase: nucleotide substitution and gene conversion. Genetics 123:845–863

    Google Scholar 

  • Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York, pp293–298

    Google Scholar 

  • Nettancourt D de (1977) Incompatibility in angiosperms. Springer, Berlin Heidelberg New York

    Google Scholar 

  • Pandey KK (1970) Elements of the S-gene complex. VI. Mutations of the self-incompatibility gene, pseudo-compatibility and origin of incompatibility locus. Genetica 41:477–516

    Google Scholar 

  • Pearson WR, Lipman DJ (1988) Improved tools for biological sequences analysis. Proc Natl Acad Sci USA 85:2444–2448

    CAS  PubMed  Google Scholar 

  • Rivard SR, Cappadocia M, Vincent G, Brisson N, Landry BS (1989) Restriction fragment length polymorphism (RFLP) analyses of plants produced by in vitro anther culture of Solanum chacoense Bitt. Theor Appl Genet 78:49–56

    Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    CAS  PubMed  Google Scholar 

  • Schrauwen J, Linskens H (1972) Ribonucleases in styles. Planta 102:277–285

    Google Scholar 

  • Singh A, Kao TH (1992) Gametophytic self-incompatibility: biochemical, molecular genetic, and evolutionary aspects. Int Rev Cytol 140:449–483

    Google Scholar 

  • Stein JC, Howlett B, Boyes DC, Nasrallah ME, Nasrallah JB (1991) Molecular cloning of a putative receptor protein kinase gene encoded at the self-incompatibility locus of Brassica oleracea. Proc Natl Acad Sci USA 88:8816–8820

    CAS  PubMed  Google Scholar 

  • Taylor CB, Green PJ (1991) Genes with homology to fungal and S-gene RNases are expressed in Arabidopsis thaliana. Plant Physiol 96:985–989

    CAS  Google Scholar 

  • Watanabe H, Naitoh A, Suyama Y, Inokuchi N, Shimada H, Koyama T, Ohgi K, Irie M (1990) Primary structure of a base nonspecific and adenylic acid preferential ribonuclease from Aspergillus saitoi. J Biochem 108:303

    Google Scholar 

  • Xu B, Mu J, Nevins DL, Grun P, Kao T-H (1990) Cloning and sequencing of cDNAs encoding two self-incompatibility associated proteins in Solanum chacoense. Mol Gen Genet 224:341–346

    CAS  PubMed  Google Scholar 

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Després, C., Saba-El-Leil, M., Rivard, S.R. et al. Molecular cloning of two Solanum chacoense S-alleles and a hypothesis concerning their evolution. Sexual Plant Reprod 7, 169–176 (1994). https://doi.org/10.1007/BF00228490

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  • DOI: https://doi.org/10.1007/BF00228490

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