Summary
We find that recombination between two alleles of the maize A1 locus that contain transposon insertions at known molecular positions can occur at 0.04–0.08 cM per kbp (centimorgan per kilobase pair), which is two orders of magnitude higher than the recombination rate for the whole maize genome. It is however, close to the rates found within the bronze locus, another maize structural gene for which both genetic and molecular data are available. This observation supports the idea that the genome consists of regions that are highly recombinogenic — in some cases, at least, structural genes — interspersed with regions that are less recombinogenic.
This is a preview of subscription content, access via your institution.
We’re sorry, something doesn't seem to be working properly.
Please try refreshing the page. If that doesn't work, please contact support so we can address the problem.
References
Bridges C (1938) A revised map of the salivary gland X-chromosome. J Hered 29:11–13
Bridges C, Bridges P (1939) A new map of the second chromosome. J Hered 30:475–476
Brown JJ, Mattes MG, O'Reilly C, Shepherd NS (1989) Molecular characterization of rDt, a maize transposon of the Dotted Controlling Element System. Mol Gen Genet 215:239–244
Clark SH, McCarron M, Lowe C, Chovnick A (1986) On the identification of the Rosy locus DNA in Drosophila melanogaster. Genetics 112:755–767
Clark SH, Hilliker AJ, Chovnick A (1988) Recombination can initiate and terminate at a large number of sites within the rosy locus of Drosophila melanogaster. Genetics 118:261–266
Coe EH, Hoisington D, Neuffer MG (1984) Linkage map of corn (Zea mays L). In: O'Brien SJ (ed) Genetic maps 1984. Cold Spring Harbor Laboratory Press, Cold Spring Harbor/NY, pp 491–507
Dooner HK (1986) Genetic fine structure of the Bronze locus in maize. Genetics 113:1021–1036
Dooner HK, Kermicle JL (1986) The transposable element Ds affects the pattern of intragenic recombination at the Bz and R loci in maize. Genetics 113:135–143
Emerson RA (1918) A fifth pair of factors, A, a, for aleurone color in maize, and its relation to the Cc and Rr pairs. Cornell Univ Agric Exp Stn Mem 16
Galbraith D, Harkins K, Maddox J, Auers N, Sharma D, Firoozabody E (1983) Rapid flow cytometric analysis of the cell cycle in intact plant tissues. Science 220:1049–1151
Hinton C (1965) The effects of heterozygous autosomal translocations on recombination in the X-chromosome of Drosophila melanogaster. Genetics 51:971–982
Masson P, Surosky R, Kingsbury JA, Fedoroff N (1987) Genetic and molecular analysis of the Spm-dependent a-m2 alleles of the maize a locus. Genetics 117:117–137
McClintock B (1965) Restoration of A1 gene action by crossing over. Maize Genet Coop Newsl 39:42–45
McClintock B (1967) The states of a gene locus in maize. Carnegie Inst Washington Yearb 66:664–672
Nelson O (1975) The waxy locus in maize. III. Effect of structural heterozygosity on intragenic recombination and flanking marker assortment. Genetics 79:31–44
Neuffer MG (1965) Crossing over in heterozygotes carrying different mutable alleles at the A1 locus in maize. Genetics 52:521–528
O'Reilly C, Shepherd NS, Pereira A, Schwarz-Sommer ZS, Bertram I, Robertson DS, Peterson PA, Saedler H (1985) Molecular cloning of the a1 locus of Zea mays using the transposable elements En and Mu1. EMBO J 4:877–882
Pang PP, Meyerowitz E (1987) Arabidopsis thaliana: a model system for plant molecular biology. Biotechnology 5:1177–1181
Reddy A, Britsch L, Salamini F, Saedler H, Rhode W (1987) The A1 (Anthocyanin-1) locus in Zea mays encoder dihydroquercetin reductase. Plant Sci 52:7–13
Rhoades MM (1936) The effect of varying gene dosage on aleurone colour in maize. J Genet 33:347–354
Rhoades MM (1968) Studies on the cytological basis of crossing over. In: Peacock WJ, Brock RD (eds) Replication and recombination of genetic material, Australian Academy of Science, Canberra, pp 229–241
Robertson DS (1978) Characterization of a mutator system in maize. Mutat Res 51:21–28
Schwarz-Sommer Z, Shepherd N, Tacke E, Gierl A, Rhode W, Leclercq L, Mattes M, Berndtgen R, Peterson P, Saedler H (1987) Influence of transposable elements on the structure and function of the A1 gene of Zea mays. EMBO J 6:287–294
Shepherd NS, Sheridan WF, Mattes MG, Deno G (1988) The use of Mutator for gene-tagging. In: Nelson O (ed) Plant transposable elements, Plenum Press, New York, pp 137–148
Smith CL, Econome JG, Schutt A, Kleo S, Cantor CR (1987) A physical map of the E. coli K12 genome. Science 236:1448–1453
Sturtevant AH, Beadle GW (1936) The relations of inversions in the X-chromosome of Drosophila melanogaster to crossing over and disjunction. Genetics 21:554–604
Suzuki DT (1963) Interchromosomal effects on crossing over in Drosophila melanogaster. II. Genetics 48:1605–1617
Thuriaux P (1977) Is recombination confined to structural genes on the eukaryotic genome? Nature 268:460–462
Author information
Authors and Affiliations
Additional information
Communicated by F. Salamini
Rights and permissions
About this article
Cite this article
Brown, J., Sundaresan, V. A recombination hotspot in the maize A1 intragenic region. Theoret. Appl. Genetics 81, 185–188 (1991). https://doi.org/10.1007/BF00215721
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/BF00215721
Key words
- Zea mays
- Recombination
- A1 locus