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Vibrational analysis and molecular force field of hypoxanthine as determined from ultraviolet resonance Raman spectra of native and deuterated species

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Abstract

Ultraviolet resonance Raman scattering spectra from aqueous solutions of hypoxanthine and its deuterated species (C8-deuterated, N-deuterated and C8-, N-deuterated derivatives) have been collected and reported in the spectral region between 400 and 1800 cm−1. The laser excitation wavelengths at 281 nm and 257 nm correspond to preresonance and pure resonance conditions, respectively, with the purine strongly allowed π → π* electronic transition: thus the observed experimental Raman features mainly correspond to inplane vibrational modes. The latter were then assigned according to the Wilson GF method by using an empirical harmonic valence force field. Normal mode calculations are based on a non-redundant set of internal coordinates. The calculated vibrational mode wavenumbers and their isotopic shifts upon selective deuterations are in good agreement with the experimental data. The present normal mode analysis rests on the transferability of the guanine and adenine force constants proposed in recent works based on resonance Raman spectroscopy and neutron inelastic scattering data from these major purine bases.

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References

  • Brown KG, Kiser EJ, Peticolas WL (1972) The conformation of polycytidylic acid, polyguanylic acid, polyinosilic acid and their helical complexes in aqueous solutions from laser Raman spectroscopy. Biopolymers 11:1855–1869

    Google Scholar 

  • Chinsky L, Turpin PY (1978) Ultraviolet resonance Raman study of DNA and of its interaction with actinomycin D. Nucl Acids Res 5:2969–2977

    Google Scholar 

  • Chou CH, Thomas Jr GJ, Arnott S, Campbell Smith PJ (1977) Raman spectral studies of nucleic acids XVII. Conformational structures of polyinosilic acid. Nucl Acids Res 4:2407–2419

    Google Scholar 

  • Coulombeau C, Dhaouadi Z, Ghomi M, Jobic H, Tomkinson J (1991) Vibrational analysis of guanine by neutron inelastic scattering. Eur Biophys J 19:323–326

    Google Scholar 

  • Dhaouadi Z, Ghomi M, Austin JC, Girling RB, Hester RE, Mojzes P, Chinsky L, Turpin PY, Coulombeau C, Jobic H, Tomkinson J (1993a) Vibrational motions of bases of Nucleic acids as revealed by neutron inelastic scattering and resonance Raman scattering. 1. Adenine and its deuterated species. J Phys Chem 97:1074–1084

    Google Scholar 

  • Dhaouadi Z, Ghomi M, Coulombeau Ce, Coulombeau C, Jobic H, Mojzes P, Chinsky L, Turpin PY (1993b) The molecular force field of guanine and its deuterated species as determined from neutron inelastic scattering and resonance Raman measurements. Eur Biophys J 22:225–236

    Google Scholar 

  • Dhaouadi Z, Ghomi M, Mojzes P, Turpin PY, Chinsky L (1994) Ultraviolet resonance Raman spectra from aqueous solutions of 2-aminoadenine and its deuterated species. Eur Biophys J (in press)

  • Ghomi M, Letellier R, Taillandier E (1988) A critical review of nucleosidic vibration modes appearing in the 800–500 cm−1 spectral region based on a new harmonic dynamics calculations. Biopolymers 27:605–616

    Google Scholar 

  • Gusoni M, Zerbi G (1968) Symmetry coordinates in molecular vibrations. J Mol Spectrosc 26:485–488

    Google Scholar 

  • Livramento J, Thomas Jr GJ (1974) Detection of hydrogen-deuterium exchange in purines by laser-Raman spectroscopy. Adenine 5′-monophosphate and polyriboadenylic acid. J Am Chem Soc 96:6529–6531

    Google Scholar 

  • Majoube M (1984) Vibrational spectra of guanine. A normal coordinate analysis. J Chim Phys (Paris) 81:303–315

    Google Scholar 

  • Majoube M (1993) (private communication)

  • Medeiros GC, Thomas Jr GJ (1971) Raman studies of nucleic acids IV. Vibrational spectra and associative interactions of aqueous inosine derivatives. Biochim Biophys Acta 247:449–462

    Google Scholar 

  • Mirau PA, Kearns DR (1984) Comparison of the conformation of poly(dI-dC) with poly(dI-dBr5C) and the B and Z forms of poly(dG-dC). One- and two-dimensional NMR studies. Biochemistry 23:5439–5446

    Google Scholar 

  • Miskovsky P, Chinsky L, Laigle A, Turpin PY (1989) The Z conformation of poly (dA-dT).poly(dA-dT) in solution as studied by ultraviolet resonance Raman spectroscopy. J Biomol Struct Dyn 7:623–637

    Google Scholar 

  • Miskovsky P, Tomkova A, Chinsky L, Turpin PY (1993) Conformational transitions of poly (dI-dC) in aqueous solution as studied by ultraviolet resonance Raman spectroscopy. J Biomol Struct Dyn 11:655–669

    Google Scholar 

  • Mitsui Y, Langridge R, Shortle BE, Cantor CR, Grant RC, Kodama M, Wells RD (1970) Physical and enzymatic studies of poly d(I-C).poly d(I-C), an unusual double-helical DNA. Nature 228:1166–1169

    Google Scholar 

  • Nishimura Y, Tsuboi M, Kato S, Morokuma K (1985) In-plane vibrational modes of guanine from an ab initio MO calculation. Bull Chem Soc Jap 58:638–645

    Google Scholar 

  • Sutherland JC, Griffin KP (1983) Vacuum ultraviolett circular dichroism of poly(dI-dC)2: no evidence for a left-handed doublex helix. Biopolymers 22:1445–1448

    Google Scholar 

  • Thamann TJ, Lord RC, Wang AHJ, Rich A (1981) The high salt form of poly(dG-dC).poly(dG-dC) is left-handed Z-DNA: Raman spectra of crystal and solutions. Nucl Acids Res 20:5443–5457

    Google Scholar 

  • Thomas Jr GJ, Livramento J (1975) Kinetics of hydrogen-deuterium exchange in adenosine, 5′-monophosphate, adenosine 3′:5′ monophosphate and poly(riboadenylic acid) determined by laser-Raman spectroscopy. Biochemistry 14:5210–5218

    Google Scholar 

  • Vorlickova M, Sagi J (1991) Transitions of poly(dI-dC), poly(dI-methyl5dC) and poly(dI-bromo5dC) among and within the B-, Z-, A- and X-DNA families of conformations. Nucl Acids Res 19:2343–2347

    Google Scholar 

  • Weidlich T, Lindsay SM, Peticolas WL, Thomas GA (1990) Low frequency Raman spectra of Z-DNA. J Biomol Struct Dyn 7:849–858

    Google Scholar 

  • Wilson EB, Decius JC, Cross PC (1955) Molecular vibrations. McGraw Hill, New York

    Google Scholar 

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Correspondence to: M. Ghomi

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Ulicny, J., Ghomi, M., Tomkova, A. et al. Vibrational analysis and molecular force field of hypoxanthine as determined from ultraviolet resonance Raman spectra of native and deuterated species. Eur Biophys J 23, 115–123 (1994). https://doi.org/10.1007/BF00208865

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  • DOI: https://doi.org/10.1007/BF00208865

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