Abstract
The arylsulfatase A gene of a Japanese patient who has the juvenile form of metachromatic leukodystrophy, and who has been previously reported as a heterozygote of the 1070A mutation, was investigated. Nucleotide sequence analysis revealed the presence of a previously unreported C-to-T substitution (designated 2330T), 22 nucleotides downstream from the exon 8 splice acceptor site. Although the 2330T mutation itself results in a single amino acid substitution of Thr409 by Ile, the analysis of the patient's cDNA fragments amplified by the reverse transcription-polymerase chain reaction revealed that transcripts of the 2330T allele were spliced both normally and aberrantly. The aberrant splicing produced a 27-nucleotide deletion from the usual exon 8 splice acceptor site. These results indicate that the new mutation is a rare case of an exon mutation affecting splice site selection. The mechanism of this aberrant pre-mRNA splicing is discussed.
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Baum H, Dodgson KS, Spencer B (1959) The assay of arylsulfatase A and B in human urine. Clin Chim Acta 4:453–455
Chen EY, Seeburg PH (1985) Supercoil sequencing: a fast and simple method for sequencing plasmid DNA. DNA 4:165–170
Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156–159
Cote GJ, Stolow DT, Peleg S, Berget SM, Gagel RF (1992) Identification of exon sequences and an exon binding protein involved in alternative RNA splicing of calcitonin/CGRP. Nucleic Acids Res 20:2361–2366
Dubois G, Turpin JC, Baumann N (1975) Absence of ASA activity in healthy father of a patient with metachromatic leukodystrophy. N Engl J Med 293:302
Eperon LP, Graham IR, Griffiths AD, Eperon IC (1988) Effects of RNA secondary structure on alternative splicing of pre-mRNA: is folding limited to a region behind the transcribing RNA polymerase? Cell 54:393–401
Fluharty AL, Fluharty CB, Bohne W, Figura K von, Gieselmann V (1991) Two new arylsulfatase A (ARSA) mutations in a juvenile metachromatic leukodystrophy (MLD) patient. Am J Hum Genet 49:1340–1350
Garcia-Blanco MA, Jamison SF, Sharp PA (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev 3: 1874–1886
Gerke V, Steitz JA (1986) A protein associated with small nuclear ribonucleoprotein particles recognizes the 3′ splice site of premessenger RNA. Cell 47:973–984
Gieselmann V, Polten A, Kreysing J, Figura K von (1989) Arylsulfatase A pseudodeficiency: loss of a polyadenylation signal and N-glycosilation site. Proc Natl Acad Sci USA 86: 9436–9440
Green MR (1991) Biochemical mechanisms of constitutive and regulated pre-mRNA splicing. Annu Rev Cell Biol 7:559–599
Hasegawa Y, Kawame H, Eto Y (1993) Mutations in arylsulfatase A gene of Japanese patients with metachromatic leukodystrophy. DNA Cell Biol 12:493–498
Hedley ML, Maniatis T (1991) Sex-specific splicing and polyadenylation of dsx pre-mRNA requires a sequence that binds specifically to tra-2 protein in vitro. Cell 65:579–586
Hoshijima K, Inoue K, Higuchi I, Sakamoto H, Shimura Y (1991) Control of doublesex alternative splicing by transformer and transformer-2 in Drosophila. Science 252:833–836
Kappler J, Figura K von, Gieselmann V (1992) Late-onset metachromatic leukodystrophy: molecular pathology in two siblings. Ann Neurol 31:256–261
Kihara H, Ho CK, Fluharty AL, Tsay KK, Hartlage PL (1980) Prenatal diagnosis of metachromatic leukodystrophy in a family with pseudo arylsulfatase A deficiency by the cerebroside sulfate loading test. Pediatr Res 14:224–227
Kolodny EH (1989) Metachromatic leukodystrophy and multiple sulfatase deficiency: sulfatide lipidosis. In: Scriver CR, Beaudet AL, Sly WS, Valle D (eds) Metabolic basis of inherited disease, vol 2, 6th edn. McGraw-Hill, New York, pp 1721–1750
Kondo R, Wakamatsu N, Yoshino H, Fukuhara N, Miyatake T, Tsuji S (1991) Identification of a mutation in the arylsulfatase A gene of a patient with adult-type metachromatic leukodystrophy. Am J Hum Genet 48:971–978
Kreysing J, Figura K von, Gieselmann V (1990) Structure of arylsulfatase A gene. Eur J Biochem 191:627–631
Lightenberg JL, Gennissen AMC, Vos HL, Hilkens J (1991) A single nucleotide polymorphism in an exon dictates allele dependent differential splicing of episialin mRNA. Nucleic Acids Res 19:297–301
McInnes B, Potier M, Wakamatsu N, Melancon SB, Klavins MH, Tsuji S, Mahuran DJ (1992) An unusual splicing mutation in the HEXB gene is associated with dramatically different phenotypes in patients from different racial backgrounds. J Clin Invest 90:306–314
Okayama H, Berg P (1983) A cDNA cloning vector that permits expression of cDNA inserts in mammalian cells. Mol Cell Biol 3:280–289
Polten A, Fluharty AL, Fluharty CB, Kappler J, Figura K von, Gieselmann V (1991) Molecular basis of different forms of metachromatic leukodystrophy. N Engl J Med 324:18–22
Porter MT, Fluharty AL, Trammell J, Kihara H (1971) A correlation of intracellular cerebroside sulfatase activity in fibroblasts with latency in metachromatic leukodystrophy. Biochem Biophys Res Commun 44:660–666
Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-termination inhibitors. Proc Natl Acad Sci USA 74:5463–5467
Solnick D (1985) Alternative splicing caused by RNA secondary structure. Cell 43:667–676
Solnick D, Lee SI (1987) Amount of RNA secondary structure required to induce an alternative splicing. Mol Cell Biol 7:3194–3198
Stein C, Gieselmann V, Kreysing J, Schmidt B, Pohlmann R, Waheed A, Meyer HE, O'Brien JS, Figura K von (1989) Cloning and expression of human arylsulfatase A. J Biol Chem 264:1252–1259
Strauss WM (1987) Preparation of genomic DNA from mammalian tissues. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (eds) Current protocols in molecular biology, vol 1. Greene/Wiley, New York, pp 2.2.1–2.2.3
Swanson MS, Dreyfuss G (1988) RNA binding specificity of hn-RNP proteins: a subset binds to the 3′ end of introns. EMBO J 7:3519–3529
Tazi J, Alibert C, Temsamani J, Reveillaud I, Cathala G, Brunel C, Jeanteur P (1986) A protein that specifically recognizes the 3′ splice site of mammalian pre-mRNA introns is associated with a small nuclear ribonucleoprotein. Cell 47:755–766
Wakamatsu N, Kobayashi H, Miyatake T, Tsuji S (1992) A novel exon mutation in the human β-hexosaminidase β subunit gene affects 3′ splice site selection. J Biol Chem 267:2406–2413
Zamore PD, Green MR (1989) Identification, purification, and biochemical characterization of U2 small nuclear ribonucleoprotein auxiliary factor. Proc Natl Acad Sci USA 86:9243–9247
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Hasegawa, Y., Kawame, H., Ida, H. et al. Single exon mutation in arylsulfatase A gene has two effects: loss of enzyme activity and aberrant splicing. Hum Genet 93, 415–420 (1994). https://doi.org/10.1007/BF00201666
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DOI: https://doi.org/10.1007/BF00201666