Abstract
Z-DNA is a left-handed helix which can form within tracts of alternating purines and pyrimidines. Tracts of potential Z-DNA identified by sequence inspection are often noted within regulatory portions of genes, but evidence that these tracts of sequence actually exist as Z-DNA is very limited, and not available for any plant gene. In this study, the chemical probes osmium tetroxide, diethylpyrocarbonate and hydroxylamine were used to show that a tract of alternating purines and pyrimidines in the Adh1 promoter (from -311 to -325) actually assumes a Z-DNA conformation under superhelical stress in vitro.
References
Bensimhon, M, Gabarro-Arpa, J, Ehrlich, R, Reiss, C: Physical characteristics in eucaryotic promoters. Nucl Acids Res 11: 4521–4540 (1983).
Bianchi, A, Wells, RD, Heintz, NH, Caddle, MS: Sequences near the origin of replication of the DHFR locus of Chinese hamster ovary cells adopt left-handed Z-DNA and triplex structures. J Biol Chem 265: 21789–21796 (1990).
Church, GM, Gilbert, W: Genomic sequencing. Proc Natl Acad Sci USA 81: 1991–1995 (1984).
Ferl, RJ, Nick, HS, Laughner, BH: Architecture of a plant promoter: S1 nuclease hypersensitive features of maize Adh1. Plant Mol Biol 8: 299–307 (1987).
Ha, S-B, An, G: Identification of upstream regulatory elements involved in the develop mental expression of the Arabidopsis thaliana cab1 gene. Proc Natl Acad Sci USA 85: 8017–8021 (1988).
Johnson, BH, Rich, A: Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution. Cell 42: 713–724 (1985).
Krishna, P, Morgan, AR, van deSande, JH: Interaction of recA protein with left-handed Z-DNA. Biochem J 275: 711–719 (1991).
Lam, E, Katagiri, F, Chua, N-H: Plant nuclear factor ASF-1 binds to an essential region of the nopaline synthase promoter. J Biol Chem 265: 9909–9913 (1990).
Lu G-H, Ferl RJ: Site specific oligonucleotide binding to maize Adh1 gene promoter represses Adh1-GUS gene expression in vivo. Submitted.
Nordheim, A, Rich, A: Negatively supercoiled simian virus 40 DNA contains Z-DNA segment within transcriptional enhancer sequences. Nature (London) 303: 674–679 (1983).
Rich, A, Nordheim, A, Azorin, A: Stabilization and detection of natural left-handed Z-DNA. J Biomol Struct Dynam 1: 1–19 (1983).
Thomas, MJ, Freeland, TM, Strobl, JS: Z-DNA formation in the rat growth hormone gene promoter region. Mol Cell Biol 10: 5378–5387 (1990).
Wittig, B, Dorbic, T, Rich, A: Transcription is associated with Z-DNA formation in metabolically active permeabilized mammalian cell nuclei. Proc Natl Acad Sci USA 88: 2259–2263 (1991).
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Ferl, R.J., Paul, AL. Chemical detection of Z-DNA within the maize Adh1 promoter. Plant Mol Biol 18, 1181–1184 (1992). https://doi.org/10.1007/BF00047722
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DOI: https://doi.org/10.1007/BF00047722