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Expression patterns of novel genes encoding homeodomain leucine-zipper proteins in Arabidopsis thaliana

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Abstract

A recently discovered class of genes in Arabidopsis thaliana encode putative transcription factors which contain a homeodomain closely linked to a leucine zipper motif. We have previously reported on the cloning and cDNA sequence of one gene of this class, Athb-3. In this article we show this gene to be expressed predominantly in the cortex of the root and the stem. Using the Athb-3 clone as a probe we have isolated cDNA clones corresponding to three novel homeodomain-leucine zipper proteins. These clones, Athb-5, Athb-6 and Athb-7, hybridized to transcripts that were relatively abundant in the leaf, but also present in other vegetative organs, as well as in the flower. Only weak hybridization was observed to seed pod samples. These observations indicate that these Athb genes have major functions in the mature plant, and therefore, in contrast to homeobox genes in other eukaryotes and to the kn-1 gene in maize, are unlikely to function in the primary control of developmental processes during embryogenesis or organogenesis. The deduced amino acid sequences of Athb-5, Athb-6 and Athb-7 are highly similar to the previously isolated Athb-1, Athb-2 and Athb-3 in the homeodomain and leucine-zipper parts of the proteins, whereas the similarities to homeodomain proteins from other eukaryotes are limited. The Athb proteins,thus constitute a new and well defined class of homeodomain proteins, apparently unique to plants.

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References

  1. Bellman R, Werr W: Zmhoxla, the product of a novel maize homeobox gene, interacts with the Shrunken 26 feedback control element. EMBO J 11: 3367–3374 (1992).

    Google Scholar 

  2. Bürglin TR, Finney M, Coulson A, Ruvkun G: Caenorhabditis elegans has scores of homeobox containing genes. Nature 341: 239–243 (1989).

    Google Scholar 

  3. Bush SJ, Sassone-Corsi P: Dimers, leucine zippers and DNA-binding domains. Trends Genet 6: 36–40 (1990).

    Google Scholar 

  4. Carabelli M, Sessa G, Baima S, Morelli G, Ruberti I: The Arabidopsis Athb-2 and -4 genes are strongly induced by far-red-rich light. Plant J 4: 469–479 (1993).

    Google Scholar 

  5. Cox KH, Goldberg RB: Analysis of plant gene expression. In: Shaw CH (ed) Plant Molecular Biology: A Practical Approach Oxford, England: IRL press. pp. 1–35 (1988).

    Google Scholar 

  6. Dellaporta SL, Wood J, Hicks JB: A plant DNA minipreparation: version II. Plant Mol Biol Rep 1: 19–21 (1983).

    Google Scholar 

  7. Garcia-Fernandez J, Baguna J, Salo E: Planarian homeobox genes: cloning, sequence analysis and expression. Proc Natl Acad Sci USA 88: 7338–7342 (1991).

    Google Scholar 

  8. Jones JDG, Duinsmuir P, Bedbrook J: High level expression of introduced chimeric genes in regenerated transformed plants. EMBO J 4: 2411–2418 (1985).

    Google Scholar 

  9. Kissinger CR, Beishan L, Martin-Blanco E, Kornberg TB, Pabo CO: Crystal structure of an engrailed homeodomain-DNA complex at 2.8 Å resolution: a framework for understanding homeodomain-DNA interactions. Cell 63: 579–590 (1990).

    Google Scholar 

  10. Lamb P, McKnight S: Diversity and specificity in transcriptional regulation: the benefits of heterotypic dimerization. Trends Biochem Sci 16: 417–422 (1991).

    Google Scholar 

  11. Maniatis T, Fritsch EF, Sambrook J: Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1989).

    Google Scholar 

  12. Mattsson J, Söderman E, Svenson M, Borkird C, Engström P: A new homeobox-leucine zipper gene from Arabidopsis thaliana. Plant Mol Biol 18: 1019–1022 (1992).

    Google Scholar 

  13. Müller MM, Ruppert S, Schaffner W, Matthias P: A cloned octamer transcription factor from luymphoid-specific promoters in non-B cells. Nature 336: 544–551 (1988).

    Google Scholar 

  14. Nordin K, Heino P, Palva ET: Separate signal pathways regulate the expression of a low-temperature induced gene in Arabidopsis thaliana (L.) Heynh. Plant Mol Biol 16: 1061–1071 (1991).

    Google Scholar 

  15. Otting G, Quian YQ, Billeter M, Müller M, Affolter M, Gehring WJ, Wütrich K: Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution. EMBO J 9: 3085–3092 (1990).

    Google Scholar 

  16. Ruberti I, Sessa G, Lucchetti S, Morelli G: A novel class of plant proteins containing a homeodomain with a closely linked leucine zipper motif. EMBO J 10: 1787–1791 (1991).

    Google Scholar 

  17. Sanger F, Niklen S, Coulson AR: DNA sequencing with chainterminating inhibitors. Proc Natl Acad Sci USA 74: 5463–5467 (1977).

    Google Scholar 

  18. Schena M, Davis RW: HD-Zip protein members of an Arabidopsis homeodomain protein superfamily. Proc Natl Acad Sci USA 89: 3894–3898 (1992).

    Google Scholar 

  19. Schena M, Lloyd AM, Davis RW: The HAT4 gene of Arabidopsis encodes a developmental regulator. Genes Devel 7: 367–379 (1993).

    Google Scholar 

  20. Schmeltzer E, Jahnen W, Hahlbrock K: In situ localization of light induced chalcone synthase mRNA, chalcone synthase and flavonoid end products in epidermal cells of parsley leaves. Proc Natl Acad Sci USA 85: 2989–2993 (1988).

    Google Scholar 

  21. Scott MP, Tamkun JW, HartzellIII GW: The structure and function of the homeodomain. Biochim Biophys Acta (Rev Cancer) 9: 25–48 (1989).

    Google Scholar 

  22. Scheidereit C, Cromlish JA, Gerster T, Kawakami K, Balmaceda C-G, Currie A, Roeder RG: A human lymphoid-specific transcription factor that activates immunoglobulin genes is a homeobox protein. Nature 336: 551–557 (1988).

    Google Scholar 

  23. Sessa G, Morelli G, Ruberti I: The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO J 12: 3507–3517 (1993).

    Google Scholar 

  24. Smith LG, Greene B, Veit B, Hake S: A dominant mutation in the maize homeobox gene Knotted-1, causes its ectopic expression in leaf cells with altered fates. Development 116: 21–30 (1992).

    Google Scholar 

  25. Somssich IE, Schmeltzer E, Bollmann J, Hahlbrock K: Gene structure and in situ transcript localization of pathogenesis-related protein 1 in parsley. Mol Gen Genet 213: 93–98 (1988).

    Google Scholar 

  26. Vollbrecht E, Veit B, Sinha N, Hake S: The developmental gene Knotted-1 is a member of a maize homeobox gene family. Nature 350: 241–243 (1991).

    Google Scholar 

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Söderman, E., Mattsson, J., Svenson, M. et al. Expression patterns of novel genes encoding homeodomain leucine-zipper proteins in Arabidopsis thaliana . Plant Mol Biol 26, 145–154 (1994). https://doi.org/10.1007/BF00039527

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