Skip to main content
Log in

Substances in nuclear wheat germ extracts which interfere with polymerase III transcriptional activity in vitro

  • Published:
Plant Molecular Biology Aims and scope Submit manuscript

Abstract

Wheat germ nuclear extracts inhibited an active yeast polymerase III (pol III) transcription extract. We isolated two chromatin-associated fractions which harbored biochemically distinguishable inhibitory activities, each contributing about 40–50% to the total inhibitory activity. One fraction, which was released from the chromatin upon treatment with 350 to 900 mM NaCl, was purified to homogeneity and identified as histone H1. It inhibited the yeast extract by excluding the transcription machinery from the template DNA. It can be partially antagonized by additional nontemplate DNA together with templates that have strong pol III promoters. The other fraction, which was released from the chromatin between 0 and 350 mM NaCl, inhibited transcription by affecting transcription complex formation partially through transcription factor-inhibitor interactions. Furthermore, it affected the rate of transcription reinitiation but not the elongation rate. Ways to move towards an active, DNA-dependent pol III plant extract are discussed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Abbreviations

Pol I, II, III:

RNA polymerase I, II, III

SDS:

sodium dodecyl sulfate

TFIIIC:

transcription factor IIIC

References

  1. Ackerman, S, Flynn, PA, Davis, EA: Partial purification of plant transcription factors. I. Initiation. Plant Mol Biol 9: 147–158 (1987).

    Google Scholar 

  2. Allison, DS, Goh, SH, Hall, BD: The promoter sequence of a yeast tRNAtyr gene. Cell 34: 655–664 (1983).

    Google Scholar 

  3. Baker, RE, Hall, BD: Structural features of yeast tRNA genes which affect transcription factor binding. EMBO J 3: 2793–2800 (1984).

    Google Scholar 

  4. Baker, RE, Gabrielsen, O, Hall, BD: Effects of tRNATyr point mutations on the binding of yeast RNA polymerase III transcription factor C. J Biol Chem 261: 5275–5282 (1986).

    Google Scholar 

  5. Bidlingmeyer, BA, Cohen, SA, Tarvin, TL: Rapid analysis of amino-acids using pre-column derivatization. J Chromatogr 336: 93–104 (1984).

    Google Scholar 

  6. Bradford, MM: A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248–254 (1976).

    Google Scholar 

  7. Elgin, SC, Bonner, J: Partial fractionation and chemical characterization of the major nonhistone chromosomal proteins. Biochemistry 11: 772–781 (1972).

    Google Scholar 

  8. Fuhrman, SA, Engelke, DR, Geiduschek, EP: HeLa cell RNA polymerase III transcription factors. J Biol Chem 259: 1934–1943 (1984).

    Google Scholar 

  9. Furter, R, Hall, BD: Specific transcription and reinitiation of class III genes in wheat embryo nuclei and chromatin. Plant Mol Biol 12: 567–577 (1989).

    Google Scholar 

  10. Galli, G, Hofstetter, H, Birnstiel, ML: Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements. Nature 294: 626–631 (1981).

    Google Scholar 

  11. Guilfoyle, TJ, Suzich, JA Lindberg, M: Synthesis of 5S rRNA and putative precursor tRNAs in nuclei isolated from wheat embryos. Plant Mol Biol 7: 95–104 (1986).

    Google Scholar 

  12. Hager, DA, Burgess, RR: Elution of proteins from sodium dodecyl sulfate-polyacrylamide gels, removal of SDS, and renaturation of enzymatic activity: Results with sigma subunit of Escherichia coli RNA polymerase, wheat germ DNA topoisomerase, and other enzymes. Anal Biochem 109: 76–86 (1980).

    Google Scholar 

  13. Jendrisak, J: Purification and subunit structure of DNA-dependent RNA polymerase III from wheat germ. Plant Physiol 67: 438–444 (1981).

    Google Scholar 

  14. Jendrisak, JJ, Burgess, R: A new method for the large-scale purification of wheat germ DNA-dependent RNA polymerase II. Biochemistry 14: 4639–4645 (1975).

    Google Scholar 

  15. Kassavetis, GA, Riggs, DL, Negri, R, Nguyen, LH, Geiduschek, EP: Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes. Mol Cell Biol 9: 2551–2566 (1989).

    Google Scholar 

  16. Klekamp, MS, Weil, PA: Specific transcription of homologous class III genes in yeast-soluble cell-free extracts. J Biol Chem 257: 8432–8441 (1982).

    Google Scholar 

  17. Konarska, M, Filipowicz, W, Domdey, H, Gross, HJ: Formation of a 2′-phosphomonoester, 3′,5′-phosphodiester linkage by a novel RNA ligase in wheat germ. Nature 293: 112–116 (1981).

    Google Scholar 

  18. Laemmli, UK: Cleavage of structural proteins during assembly of the head of bacteriophage T4. Nature 227: 680–685 (1970).

    Google Scholar 

  19. Lee, C, Levin, A, Branton, D: Copper staining: a five minute protein stain for sodium dodecyl sulfate-polyacrylamide gels. Anal Biochem 166: 308–312 (1987).

    Google Scholar 

  20. Luthe, DS, Quatrano, RS: Transcription in isolated wheat nuclei. Isolation of nuclei and elimination of endogenous ribonuclease activity. Plant Physiol 65: 305–308 (1980).

    Google Scholar 

  21. Manley, JL, Fire, A, Cano, A, Sharp, PA, Gefter, ML: DNA-dependent transcription of adenovirus genes in a soluble whole cell extract. Proc Natl Acad Sci USA 77: 3855–3859 (1980).

    Google Scholar 

  22. Marcu, K, Dudock, B: Characterization of highly efficient protein synthesizing system derived from commercial wheat germ. Nucl Acids Res 1: 1385–1409 (1974).

    Google Scholar 

  23. Miskiminis, WK, Roberts, MP, McClelland, A, Ruddle, FH: Use of a protein-blotting procedure and a specific DNA probe to identify nuclear proteins that recognize the promoter region of the transferrin receptor gene. Proc Natl Acad Sci USA 82: 6741–6744 (1985).

    Google Scholar 

  24. Schlissel, MS, Brown, DD: The transcriptional regulation of Xenopus 5S RNA genes in chromatin: the roles of active stable transcription complexes and histone H1. Cell 37: 903–913 (1984).

    Google Scholar 

  25. Spiker, S, Key, JL, Wakim, B: Identification and fractionation of plant histones. Arch Biochem Biophys 176: 510–518 (1976).

    Google Scholar 

  26. Stange, N, Beier, H: A cell-free plant extract for accurate pre-tRNA processing, splicing and modification. EMBO J 6: 2811–2818 (1987).

    Google Scholar 

  27. Suzuki, M: SPKK, a new nucleic acid-binding unit of protein found in histone. EMBO J 8: 797–804 (1989).

    Google Scholar 

  28. Tremethick, DJ, Molloy, PL: High mobility group proteins 1 and 2 stimulate transcription in vitro by RNA polymerase II and III. J Biol Chem 261: 6986–6992 (1986).

    Google Scholar 

  29. Yamazaki, K-I, Katagiri, F, Imaseki, H, Chua, N-H: TGA1a, a tobacco DNA-binding protein, increases the rate of preinitiation complex formation in a plant in vitro transcription system. Proc Natl Acad Sci USA 87: 7035–7039, 9508 (1990).

    Google Scholar 

  30. Wolffe, AP: Dominant and specific repression of Xenopus oocyte 5S RNA genes and satellite I DNA by histone H1. EMBO J 8: 527–537 (1989).

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Furter, R., Hall, B.D. Substances in nuclear wheat germ extracts which interfere with polymerase III transcriptional activity in vitro . Plant Mol Biol 17, 773–785 (1991). https://doi.org/10.1007/BF00037060

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00037060

Key words

Navigation