Abstract
The frxC gene, one of the unidentified open reading frames present in liverwort chloroplast DNA, shows significant homology with the nifH genes coding for the Fe protein, a component of the nitrogenase complex (Ohyama et al., 1986, Nature 322: 572–574). A truncated form of the frxC gene was designed to be over-expressed in Escherichia coli and an antibody against this protein was prepared using the purified product as an antigen. This antibody reacted with a protein in the soluble fraction of liverwort chloroplasts, which had an apparent molecular weight of 31 000, as revealed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, in good agreement with a putative molecular weight of 31945 deduced from the DNA sequence of the frxC gene. In a competitive inhibition experiment, the antigenicity of this protein was indicated to be similar to that of the over-expressed protein in E. coli. Therefore, we concluded that the frxC gene was expressed in liverwort chloroplasts and that its product existed in a soluble form. The molecular weight of the frxC protein was approximately 67 000, as estimated by gel filtration chromatography, indicating that the frxC protein may exist as a dimer of two identical polypeptides analogous to the Fe protein of nitrogenase. The results obtained from affinity chromatography supported the possibility that the frxC protein, which possesses a ATP-binding sequence in its N-terminal region that is conserved among various other ATP-binding proteins, has the ability to bind ATP.
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Amann E, Brosius J: ‘ATG vector’ for regulated high-level expression of cloned genes in Escherichia coli. Gene 40: 183–190 (1985).
Apte SK, Thomas J: Nitrogen fixation genes (nifH,D,K) in the filamentous nonheterocystous cyanobacterium Plectonema boryanum do not arrange. J Genet 66: 101–110 (1987).
Ausubel FM, Cannon FC: Molecular genetic analysis of Klebsiella pneumoniae nitrogen-fixation genes. Cold Spring Harbor Symp Quant Biol 45: 487–492 (1980).
Brosius J, Ertle M, Storella J: Spacing of the −10 and −35 regions in the tac promoter: effect on its in vivo activity. J Biol Chem 260: 3539–3541 (1985).
Burnette WN: ‘Western blotting’: electrophoretic transfer of proteins from sodium dodecyl sulfate-polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein A. Anal Biochem 112: 195–203 (1981).
Burris RH: Nitrogen fixation—assay methods and techniques. Meth Enzymol 24: 415–431 (1972).
Charette MR, Henderson GW, Markovitz A: ATP hydrolysis-dependent protease activity of the lon(capR) protein of Escherichia coli K-12. Proc Natl Acad Sci USA 78: 4728–4732 (1981).
Chung CH, Goldberg AL: The product of the lon(capR) gene in E. coli is the ATP-dependent protease La. Proc Natl Acad Sci USA 78: 4931–4935 (1981).
Fish LE, Küch U, Bogorad L: Two partially homologous adjacent light-inducible maize chloroplast genes encoding polypeptides of the P700 chlorophyll a-protein complex of photosystem I. J Biol Chem 260: 1413–1421 (1985).
Hausinger RP, Howard JB: The amino acid sequence of the nitrogenase iron protein from Azotobacter vinelandii. J. Biol Chem 257: 2483–2490 (1982).
Hausinger RP, Howard JB: Thiol reactivity of the nitrogenase Fe-protein from Azotobacter vinelandii. J Biol Chem 258: 13486–13492 (1983).
Hearst JE, Alberti M, Doolittle RF: A putative nitrogenase reductase gene found in the nucleotide sequences from the photosynthetic gene cluster of R. capsulata. Cell 40: 219–220 (1985).
Hennecke H, Kaluza K, Thöny B, Fuhrmann M, Ludwig W, Stackebrandt E: Concurrent evolution of nitrogenase genes and 16S rRNA in Rhizobium species and other nitrogen fixing bacteria. Arch Microbiol 142: 342–348 (1985).
Higgins CF, Hiles ID, Salmond GPC, Gill DR, Downie JA, Evans IJ, Holland IB, Gray L, Buckel SD, Bell AW, Hermodson MA: A family of related ATP-binding subunits coupled to many distinct biological processes in bacteria. Nature 323: 448–450 (1986).
Hunkapiller MW, Lujan E, Ostrander F and Hood LE: Isolation of microgram quantities of proteins from polyacrylamide gels for amino acid sequence analysis. Meth Enzymol 91: 227–236 (1983).
Jones R, Haselkorn R: The DNA sequence of the Rhodobacter capsulatus nifH gene. Nucleic Acids Res 16: 8735 (1988).
Kelly JL, Greenleaf AL, Lehman IR: Isolation of the nuclear gene encoding a subunit of the yeast mitochondrial RNA polymerase. J Biol Chem 261: 10348–10351 (1986).
Kohchi T, Shirai H, Fukuzawa H, Sano T, Komano T, Umesono K, Inokuchi H, Ozeki H, Ohyama K: Structure and organization of Marchantia polymorpha chloroplast genome IV: inverted repeat and small single copy region. J Mol Biol 203: 353–372 (1988).
Laemmli UK: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680–685 (1970).
Maniatis T, Fritsch EF, Sambrook J: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1982).
Marston FAO: The purification of eukaryotic polypeptides expressed in Escherichia coli. In: Glover DM (ed) DNA Cloning, vol 3. IRL Press, Oxford (1987).
Mevarech M, Rice D, Haselkorn R: Nucleotide sequence of a cyanobacterial nifH gene coding for nitrogenase reductase. Proc Natl Acad Sci USA 77: 6476–6480 (1980).
Mortenson LE, Thorneley RN: Structure and function of nitrogenase. Ann Rev Biochem 48: 387–418 (1979).
Mullet JE: Chloroplast development and gene expression. Ann Rev Plant Physiol Plant Mol Biol 39: 475–502 (1988).
Oh-oka H, Takahashi Y, Wada K, Matsubara H, Ohyama K, Ozeki H: The 8 kDa polypeptide in photosystem I is a probable candidate of an iron-sulfur center protein coded by the chloroplast gene frxA. FEBS Lett 218: 52–54 (1987).
Ohyama K, Fukuzawa H, Kohchi T, Shirai H, Sano T, Sano S, Umesono K, Shiki Y, Takeuchi M, Chang Z, Aota S, Inokuchi H, Ozeki H: Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322: 572–574 (1986).
Ohyama K, Fukuzawa H, Kohchi T, Sano T, Sano S, Shirai H, Umesono K, Shiki Y, Takeuchi M, Chang Z, Aota S, Inokuchi H, Ozeki H: Structure and organization of Marchantia polymorpha chloroplast genome I: cloning and gene identification. J Mol Biol 203: 281–298 (1988).
Ohyama K, Kohchi T, Sano T, Yamada Y: Newly identified groups of genes in chloroplasts. Trends Biochem Sci 13: 19–22 (1988).
Ohyama K, Wetter LR, Yamano Y, Fukuzawa H, Komano T: A simple method for isolation of chloroplast DNA from Marchantia polymorpha L. cell suspension culture. Agric Biol Chem 46: 237–242 (1982).
Ono K: Callus formation in liverwort, Marchantia polymorpha. Jap J Genet 48: 69–70 (1973).
Ono K, Ohyama K, Gamborg OL: Regeneration of the liverwort Marchantia polymorpha L. from protoplasts isolated from cell suspension culture. Plant Sci Lett 14: 225–229 (1979).
Orme-Johnson WH: Molecular basis of biological nitrogen fixation. Ann Rev Biophys Biophys Chem 14: 419–459 (1985).
Rao RN, Rogers SG: Plasmid pKC7: a vector containing ten restriction endonuclease sites suitable for cloning DNA segments. Gene 7: 79–82 (1979).
Robson RL: Identification of possible adenine nucleotide-binding sites in nitrogenase Fe- and MoFe-proteins by amino acid sequence comparison. FEBS Lett 173: 394–398 (1984).
Schumann JP, Waitches GM, Scolnik PA: A DNA fragment hybridizing to a nif probe in Rhodobacter capsulatus is homologous to a 16S rRNA gene. Gene 48: 81–92 (1986).
Shapira SK, Chou J, Richaud FV, Casadaban MJ: New versatile plasmid vectors for expression of hybrid proteins coded by a cloned gene fused to lacZ gene sequences encoding an essentially active carboxy-terminal portion of β-galactosidase. Gene 25: 71–82 (1983).
Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shinozaki K, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M: The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5: 2043–2049 (1986).
Souillard N, Magot M, Possot O, Sibold L: Nucleotide sequence of regions homologous to nifH (nitrogenase Fe protein) from the nitrogen-fixing archaebacteria Methanococcus thermolithotrophicus and Methanobacterium ivanovii: evolutionary implications. J Mol Evol 27: 65–76 (1988).
Stewart WDP, Lex M: Nitrogenase activity in the blue-green alga Plectonema boryanum strain 594. Arch Mikrobiol 73: 250–260 (1970).
Tanaka M, Haniu M, Yasunobu KT, Mortenson LE: The amino acid sequence of Clostridium pasteurianum iron protein, a component of nitrogenase III: the NH2-terminal and COOH-terminal sequences, tryptic peptides of large cyanogen bromide peptides, and the complete sequence. J Biol Chem 252: 7093–7100 (1977).
Vieira J, Messing J: The pUC plasmids, and M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19: 259–268 (1982).
Walker JE, Saraste M, Runswick MJ, Gay NJ: Distantly related sequences in the α- and β-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1: 945–951 (1982).
Wolfe KH, Sharp PM: Identification of functional open reading frames in chloroplast genomes. Gene 66: 215–222 (1988).
Yanisch-Perron C, Vieira J, Messing J: Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103–119 (1985).
Youvan DC, Bylina EJ, Alberti M, Begusch H, Hearst JE: Nucleotide and deduced polypeptide sequences of the photosynthetic reaction center, B870 antenna, and flanking polypeptides from R. capsulata. Cell 37: 949–957 (1984).
Zehnbauer BA, Markovitz A: Cloning of gene lon(capR) of Escherichia coli K-12 and identification of polypeptides specified by the cloned deoxyribonucleic acid fragment. J Bact 143: 852–863 (1980).
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Fujita, Y., Takahashi, Y., Kohchi, T. et al. Identification of a novel nifH-like (frxC) protein in chloroplasts of the liverwort Marchantia polymorpha . Plant Mol Biol 13, 551–561 (1989). https://doi.org/10.1007/BF00027315
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DOI: https://doi.org/10.1007/BF00027315