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Characterization of a cDNA encoding a proline-rich 14 kDa protein in developing cortical cells of the roots of bean (Phaseolus vulgaris) seedlings

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Abstract

A cDNA clone, corresponding to mRNAs preferentially expressed in the roots of bean (Phaseolus vulgaris L.) seedlings, was isolated. This clone contains a 381 bp open reading frame encoding a polypeptide of 13.5 kDa, designated PVR5 (Phaseolus vulgaris root 5). The amino acid sequence of this clone is rich in proline (13.5%) and leucine (12.7%) and shares significant amino acid sequence homology with root-specific and proline-rich proteins from monocots (maize and rice), and proline-rich proteins from dicots (carrot, oilseed rape, and Madagascar periwinkle). The precise biological roles of these polypeptides are unknown. PVR5 mRNA accumulation is developmentally regulated within the root, with high levels at the root apex and declining levels at distances further from the root tip. In situ hybridization shows that PVR5 mRNA specifically accumulates in the cortical ground meristem in which maximal cell division occurs. Southern blot analysis suggests that genomic DNA corresponding to PVR5 cDNA is encoded by a single gene or a small gene family.

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References

  1. Aeschbacher RA, Schiefelbein JW, Benfey PN: The genetic and molecular basis of root development Annu Rev Plant Physiol and Plant Mol Biol 45: 25–45 (1994).

    Article  Google Scholar 

  2. Aleith F, Richter G: Gene expression during induction of somatic embyogenesis in carrot cell suspensions. Planta 183: 17–24 (1990).

    Google Scholar 

  3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 215: 403–410 (1990).

    Article  PubMed  Google Scholar 

  4. Baud F, Pebay-Peyroula E, Cohen-Addad C, Odani S, Lehmann MS: Crystal structure of hydrophobic protein from soybean; a member of a new cysteine-rich family. J Mol Biol 231: 877–877 (1993).

    Article  PubMed  Google Scholar 

  5. Bergeron D, Boivin R, Baszcynski CL, Bellemare G: Root-specific expression of a glycine-rich protein gene in Brassica napus. Plant Sci 96: 87–98 (1994).

    Article  Google Scholar 

  6. Bernhard WR, Somerville CR: Coidentity of putative amylase inhibitors from barley and finger millet with phospholipid transfer proteins inferred from amino acid sequence homology. Arch Biochem Biophys 269: 695–697 (1989).

    PubMed  Google Scholar 

  7. Cassab GI, Varner JP: Cell wall proteins. Ann Rev Plant Physiol 39: 321–353 (1988).

    Article  Google Scholar 

  8. Choi D-W, Kim SJ, Kwon YM, Kim S-G: Changes of protein patterns during development of the bean (Phaseolus vularis L.) seedling roots. Mol Cell Biol 3: 385–390 (1993).

    Google Scholar 

  9. Chomczynski P, Sacchi N: Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloro-form extraction. Anal Biochem 162: 156–159 (1987).

    Article  PubMed  Google Scholar 

  10. Conkling MA, Cheng C-L, Yamamoto YT, Goodman HM: Isolation of transcriptionally regulated root-specific genes from tobacco. Plant Physiol 93: 1203–1211 (1990).

    Google Scholar 

  11. Coupe SA, Taylor JE, Issac PG, Roberts JA: Identification and characterization of a proline-rich mRNA that accumulates during pod development in oilseed rape (Brassica napus L.). Plant Mol Biol 23: 1223–1232 (1993).

    PubMed  Google Scholar 

  12. Cox KH, Goldberg RB: Analysis of plant gene expression. In: Shaw CH (ed) Plant Molecular Biology: A Practical Approach, pp. 1–35. IRL Press, Oxford (1989).

    Google Scholar 

  13. Datta N, LaFayette PR, Kroner PA, Nagao RT, Key JL: Isolation and characterization of three families of auxin down-regulated cDNA clones. Plant Mol Biol 21: 859–869 (1993).

    Article  PubMed  Google Scholar 

  14. de Pater BS, Schilperoort RA: Structure and expression of a root-specific rice gene. Plant Mol Biol 18: 161–164 (1992).

    Google Scholar 

  15. Deutch CE, Winicov I: Post-transcription of a salt-inducible alfalfa gene encoding a putative chimeric prolin-rich cell wall protein. Plant Mol Biol 27: 411–418 (1995).

    PubMed  Google Scholar 

  16. Dolan L, Janmaat K, Willemsen V, Linstead P, Poething S, Roberts K, Scheres B: Cellular organization of the Arabidopsis thaliana root. Development 199: 71–84 (1993).

    Google Scholar 

  17. Esau K: Anatomy of Seed Plant, 2nd ed. John Wiley, New York (1977).

    Google Scholar 

  18. Held BM, Wang H, John I, Wurtele ES, Colbert JT: An mRNA putatively coding for an O-methyltransferase accumulates preferentially in maize roots and is located predominantly in the region of the endodermis. Plant Physiol 102: 1001–1008 (1993).

    Article  PubMed  Google Scholar 

  19. Hotze M, Waitz A, Schroder J: cDNA for a 14-kilodalton polypeptide from madagascar periwinkle (Catharanthus roseus). Plant Physiol 104: 1097–1098 (1994).

    Article  PubMed  Google Scholar 

  20. John I, Wang H, Held BM, Wurtele ES, Colbert JT: An mRNA that specifically accumulates in maze roots delineates a novel subset of developing cortical cells. Plant Mol Biol 20: 821–831 (1992).

    PubMed  Google Scholar 

  21. Jose-Estanyol M, Ruiz-Avila L, Puigdomenech P: A maize embryo-specific gene encodes a proline-rich and hydrophobic protein. Plant Cell 4: 413–423 (1992).

    Article  PubMed  Google Scholar 

  22. Keller B, Lamb CJ: Specific expression of a novel cell wall hydroxyproline-rich glycoprotein gene in lateral root initiation. Genes Devel 3: 1639–1646 (1989).

    PubMed  Google Scholar 

  23. Michalowski CB, Bohnert HJ: Nucleotide sequence of a root-specific transcript encoding a germin-like protein from the halophyte Mesembryanthemum crystallinum. Plant Physiol 100: 537–538 (1992).

    Google Scholar 

  24. Murray MG, Thompson WF: Rapid isolation of high molecular weight plant DNA. Nucl Acids Res 8: 4321–4325 (1980).

    PubMed  Google Scholar 

  25. Mylona P, Moerman M, Yang W-C, Gloudemans T, van de Kerckhove J, van Kammen A, Bisseling T, Franssen HJ: The root epidermis-specific pea gene RH2 is homologous to a pathogenesis-related gene. Plant Mol Biol 26: 39–50 (1994).

    PubMed  Google Scholar 

  26. Nagy F, Kay SA, Chua N-H: Analysis of gene expression in transgenic plants. In: Gelvin SB, Schilperoort RA (eds) Plant Molecular Biology Manual, pp. B4: 1–29. Kluwer Academic Publishers, Belgium (1988).

    Google Scholar 

  27. Oppenheimer DG, Haas N, Silflow CD, Snustad DP: The β-tubulin gene family of Arabidopsis thaliana: preferential accumulation of the β1 transcript in roots. Gene 63: 87–102 (1988).

    Article  PubMed  Google Scholar 

  28. Salts Y, Kenigsbuch D, Wachs R, Gruissem W, Barg R: DNA sequence of the tomato fruit expressed proline-rich protein gene TPRP-F1 reveals an intron within the 3 untranslated transcript. Plant Mol Biol 18: 407–409 (1992).

    PubMed  Google Scholar 

  29. Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Springer Harbor Laboratory Press, Cold Spring Harbor, NY (1989).

    Google Scholar 

  30. Sanger F, Nicklen S: Coulson AR: DNA sequencing with chain termination inhibitors. Proc Natl Acad Sci USA 74: 5463–5467 (1977).

    PubMed  Google Scholar 

  31. Schiefelbein JW, Benfey PN: The development of plant roots: New approaches to underground problems. Plant Cell 3: 1147–1154 (1991).

    Article  PubMed  Google Scholar 

  32. Shin DH, Lee JY, Hwang KY, Kim II, Suh SW: High-resolution crystal structure of the non-specific lipid-transfer protein from maize seedlings. Structure 3: 189–199 (1995).

    Article  PubMed  Google Scholar 

  33. Showalter AM: Structure and function of plant cell wall proteins. Plant Cell 5: 9–23 (1993).

    Article  PubMed  Google Scholar 

  34. Steeve T, Sussex IM: Patterns in Plant Development, 2nd ed. Cambridge University Press, Cambridge (1989).

    Google Scholar 

  35. Taylor BH, Scheuring CF. A molecular maker for lateral root initiation: The RSI-1 gene of tomato (Lycopersicon esculentum Mill) is activated in early lateral root primodia. Mol Gen Genet 243: 148–157 (1994).

    Google Scholar 

  36. Vetter H-P, Mangold U, Schroder G, Marner F-J, Werck-Reichhart D, Schroder J: Molecular analysis and heterogous expression of an inducible cytochrom P-450 protein from perwinkle (Cantharanthus roseus L.). Plant Physiol 100: 998–1007 (1992).

    Google Scholar 

  37. Winicov I, Deutch CE: Characterization of a cDNA clone from salt-tolerant alfalfa cells that identifies salt-inducible root-specific transcripts J Plant Physiol 144: 222–228 (1994).

    Google Scholar 

  38. Xu Y, Buccholz WG, DeRose RT, Hall TC: Characterization of a rice gene family encoding root-specific proteins. Plant Mol Biol 27: 237–248 (1995).

    PubMed  Google Scholar 

  39. Yamamoto YT, Taylor CG, Acedo GN, Cheng C-L, Conkling MA: Characterization of cis-acting sequences regulating root-specific gene expression in tobacco. Plant Cell 3: 371–382 (1991).

    PubMed  Google Scholar 

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Choi, DW., Song, J.Y., Kwon, Y.M. et al. Characterization of a cDNA encoding a proline-rich 14 kDa protein in developing cortical cells of the roots of bean (Phaseolus vulgaris) seedlings. Plant Mol Biol 30, 973–982 (1996). https://doi.org/10.1007/BF00020808

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  • DOI: https://doi.org/10.1007/BF00020808

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