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The conserved ELK-homeodomain of KNOTTED-1 contains two regions that signal nuclear localization

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Abstract

Nuclear localization serves as a regulatory mechanism in the activity of several transcription factors. KNOTTED-1 (Kn1) is a homeodomain protein likely to regulate vegetative development in maize. At least twelve genes related to Kn1 are known in maize and six in Arabidopsis. Ectopic expression of the maize, rice and Arabidopsis Kn1-related genes have been shown to alter cell fate determination. In this paper, we study the nuclear localization capabilities of the Kn1 homeodomain and the proximal amino acid residues (the ELK region) which is highly conserved among Kn1-related homeodomain proteins. The ELK homeodomain (ELK-HD) of Kn1 was fused to the reporter gene uidA encoding the bacterial enzyme β-glucuronidase (GUS) and transformed into tobacco and onion cells. Quantitation of GUS activity in nuclear and total protein extracts from transgenic tobacco revealed a highly localized GUS activity in the nucleus for the ELK-HD/GUS fusion protein, as compared to the basal level of GUS activity in the nucleus for the GUS only protein. The ELK-HD/GUS transformants showed no unusual characteristics, thus indicating that expression of the putative Kn1 DNA-binding domain fused to GUS may be insufficient to create a dominant negative phenotype. Histochemical analysis of the onion epidermal cells transfected by particle bombardment demonstrated that greater than 50% of the transformed onion epidermal cells showed higher levels of GUS staining in the nucleus relative to the cytoplasm. Deletion analysis of the ELK-HD revealed that the Kn1 homeodomain comprising the three predicted α-helices and the conserved ELK domain can each function independently as nuclear localization signals.

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References

  1. Beg AA, Ruben SM, Scheinman RI, Haskell S, Rosen CA, Baldwin AS: IκB interacts with the nuclear localization sequences of the subunits of NFκB: a mechanism for cytoplasmic retention. Genes Devel 6: 1899–1913 (1992).

    Google Scholar 

  2. Boivin R, Hamel F, Beauseigle D, Bellenane G: Stage specific transcription of the homeobox gene Bnhdl in young tissues and floweres of Brassica napus. Biochim Biophys Acta 1219: 201–204 (1994).

    Google Scholar 

  3. Caltron KM, Iler N, Abate C: Nucleotides flanking a conserved TAAT core dictate the DNA binding specificity of three murine homeodomain proteins. Mol Cell Biol 13: 2354–2356 (1993).

    Google Scholar 

  4. Citovsky V, Zupan J, Warnick D, Zambryski P: Nuclear localization of Agrobacterium VirE2 protein in plant cells. Science 256: 1802–1805 (1992).

    Google Scholar 

  5. Digwall C, Laskey RA: Nuclear targeting sequences: a consensus. Trends Biochem Sci 16: 478–481 (1991).

    Google Scholar 

  6. Ekker SC, von Kessler P, Beachy PA: Differential DNA sequence recognition is a determinant of specificity in homeotic gene action. EMBO J 11: 4059–4072 (1992).

    Google Scholar 

  7. Fraley R, Rogers S, Horsch R, Eichholtz D, Flick J, Fink C, Hoffmann N, Sanders P: The SEV system: a new disarmed Ti plasmid vector system for plant transformation. Bio/technology 3: 629–635 (1985).

    Google Scholar 

  8. Garcia-Bustos J, Heitman J, Hall MN: Nuclear protein localization. Biochim Biophys Acta 1071: 83–101 (1991).

    Google Scholar 

  9. Gordon-Kamm WJ, Spencer TM, Mangano ML, Adams TR, Daines RJ, Start WG, O'Brien JV, Chambers SA, Adams WR, Willetts NG, Rice TB, Mackey CJ, Krueger RW, Kausch AP, Lemaux PG: Transformation of maize cells and regeneration of fertile transgenic plants. Plant Cell 2: 603–618 (1990).

    Google Scholar 

  10. Hake S: Unraveling the knots in plant development. Trends Genet 8: 109–114 (1992).

    Google Scholar 

  11. Hall MN, Hereford L, Herskowitz I: Targeting of E. coli β-galactosidase to the nucleus in yeast. Cell 36: 1057–1065 (1984).

    Google Scholar 

  12. Hall MN, Craik C, Hiraoka Y: Homeodomain of yeast repressor α-2 contains a nuclear localization signal. Proc Natl Acad Sci USA 87: 6954–6958 (1990).

    Google Scholar 

  13. Harter K, Kircher S, Fronmeyer H, Krenz M, Nagy F, Schafer E: Light-regulated modification and nuclear translocation of cytosolic G-box binding factors in parsley. Plant Cell 6: 545–559 (1994).

    Google Scholar 

  14. Hayashi S, Scott MP: What determines the specificity of action of Drosophila homeodomain proteins? Cell 63: 883–894 (1990).

    Google Scholar 

  15. Herskowitz I: A regulatory hierarchy for cell specialization in yeast. Nature 342: 749–757 (1989).

    Google Scholar 

  16. Hoch M, Jackle H: Transcriptional regulation and spatial patterning in Drosophila. Curr Opin Genet Devel 3: 566–573 (1993).

    Google Scholar 

  17. Hunt T: Cytoplasmic anchoring proteins and the control of nuclear localization. Cell 59: 949–951 (1989).

    Google Scholar 

  18. Jackson D, Veit B, Hake S: Expression of maize KNOT-TED1 related homeobox genes in the shoot apical meristem predicts patterns of morphogenesis in the vegetative shoot. Development 120: 405–413 (1994).

    Google Scholar 

  19. Jefferson RA: Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol Biol Rep 5: 387–403 (1987).

    Google Scholar 

  20. Kerstetter R, Vollbrecht E, Lowe B, Veit B, Yamaguchi J, Hake S: Sequence analysis and expression patterns divide the maize KNOTTED1-like homeobox genes into two classes. Plant Cell 6: 1877–1887 (1994).

    Google Scholar 

  21. Kissinger CR, Liu B, Martin-Blanco E, Kornberg TB, Pabo CO: Crystal structure of an engrailed homeodomain-DNA complex at 2.8Å resolution: a framework for understanding homeodomain-DNA interactions. Cell 63: 579–590 (1990).

    Google Scholar 

  22. Kornberg T, Tabata T: Segmentation of the Drosophila embryo. Curr Opin Genet Devel 3: 585–593 (1993).

    Google Scholar 

  23. Langdale JA: More knots untied. Curr Biol 4: 529–531 (1994).

    Google Scholar 

  24. Lincoln C, Long J, Yamaguchi J, Serikawa K, Hake S: A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants. Plant Cell 6: 1859–1876 (1994).

    Google Scholar 

  25. Lutcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele GA: Selection of AUG initiation codons differs in plants and animals. EMBO J 6: 43–48 (1987).

    Google Scholar 

  26. Ma H, McMullen MD, Finer JJ: Identification of a homeobox-containing gene with enhanced expression during soybean (Gycine max L.) somatic embryo development. Plant Mol Biol 24: 465–473 (1994).

    Google Scholar 

  27. Manzara T, Carrosco R, Gruissem W: Developmental and organ-specific changes in promoter DNA-protein interactions in the tomato rbcS gene family. Plant Cell 3: 1305–1316 (1991).

    Google Scholar 

  28. Matsuoka M, Ichikawa H, Saito A, Tada Y, Fugimura T, Kano-Murakami Y: Expression of a rice homeobox gene causes altered morphology of transgenic plants. Plant Cell 5: 1039–1048 (1993).

    Google Scholar 

  29. Otting G, Qiu Qian Y, Billeter M, Muller M, Affolter M, Gehring WJ, Wuthrich K: Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution. EMBO J 9: 3085–3092 (1990).

    Google Scholar 

  30. Perisic O, Lam E: A tobacco DNA binding protein that interacts with a light-responsive Box II element. Plant Cell 4: 831–838 (1992).

    Google Scholar 

  31. Raikhel N: Nuclear targeting in plants. Plant Physiol 100: 1627–1632 (1992).

    Google Scholar 

  32. Reid L: From gradients to axes, from morphogenesis to differentiation. Cell 63: 875–882 (1990).

    Google Scholar 

  33. Schmidt-Zachmann MS, Dargemont C, Kuhn LC, Nigg EA: Nuclear export of proteins: the role of nuclear retention. Cell 74: 493–504 (1993).

    Google Scholar 

  34. Sessa G, Morelli G, Ruberti I: The Athb-1 and-2 HD-Zip domain homodimerize forming complexes of different DNA binding specificities. EMBO J 12: 3507–3517 (1993).

    Google Scholar 

  35. Shang Z, Ebright YW, Iler N, Pendergrast PS, Echelard Y, McMahon AP, Ebright RH, Abate C: DNA affinity cleaving analysis of Homeodomain-DNA interaction: identification of homeodomain consensus sites in genomic DNA. Proc Natl Acad Sci USA 91: 118–122 (1994).

    Google Scholar 

  36. Shieh MW, Wessler SR, Raikhel NV: Nuclear targeting of the maize R protein requires two nuclear localization sequences. Plant Physiol 101: 353–361 (1993).

    Google Scholar 

  37. Silver PA: How proteins enter the nucleus. Cell 64: 489–497 (1991).

    Google Scholar 

  38. Sinha N, Hake S: Mutant characters of Knotted maize leaves are determined in the innermost tissue layers. Devel Biol 141: 203–210 (1990).

    Google Scholar 

  39. Sinha NR, Williams RE, Hake S: Overexpression of the maize homeobox gene, Knotted-1 causes a switch from determinate to indeterminate cell fate. Genes Devel 7: 787–795 (1993).

    Google Scholar 

  40. Smith DL, Johnson AD: A molecular mechanism for combinatorial control in yeast: MCM1 protein sets the spacing and orientation of the homeodomains of an α2 dimer. Cell 68: 133–142 (1992).

    Google Scholar 

  41. Smith LG, Greene B, Veit B, Hake S: A dominant mutation in the maize homeobox gene, Knotted-1 couses its ectopic expression in leaf cells with altered fates. Development 116: 21–30 (1992).

    Google Scholar 

  42. Sommer RJ, Tautz D: Involvement of an orthologue of the Drosophila pair-rule gene Hairy in segment formation of the short germ-band embryo of Tribolium (Coleoptera). Nature 361: 448–450 (1993).

    Google Scholar 

  43. Stark MR, Johnson AD: Interactions between two homeodomain proteins is specified by a short C-terminal tail. Nature 371: 429–432 (1994).

    Google Scholar 

  44. Tinland B, Koukolikova-Nicola Z, Hall MN, Hohn B: The T-DNA-linked VirD2 protein contains two distinct functional nuclear localization signals. Proc Natl Acad Sci USA 89: 7442–7446 (1992).

    Google Scholar 

  45. Treisman J, Harris E, Wilson D, Desplan C: The Homeodomain: a new face for the helix-turn-helix? Bioessays 14: 145–150 (1992).

    Google Scholar 

  46. Unger E, Parsons RL, Schmidt RJ, Bowen B, Roth BA: Dominant negative mutants of Opaque2 in maize endosperm cells. Plant Cell 5: 831–841 (1993).

    Google Scholar 

  47. van der Krol AR, Chua NH: The basic domain of plant B-Zip proteins facilitates import of a reporter protein into plant nuclei. Plant Cell 3: 667–675 (1991).

    Google Scholar 

  48. Varagona MJ, Schmidt RJ, Raikhel NB: Monocot regulatory protein Opaque-2 is localized in the nucleus of maize endosperm and transformed tobacco plants. Plant Cell 3: 105–113 (1991).

    Google Scholar 

  49. Varagona MJ, Schmidt RJ, Raikhel NV: Nuclear localization signal(s) required for nuclear targeting of the maize regulatory protein Opaque-2. Plant Cell 4: 1213–1227 (1992).

    Google Scholar 

  50. Varagona MJ, Raikhel NV: The basic domain in the bZIP regulatory protein Opaque2 serves two independent functions: DNA binding and nuclear localization. Plant J 5: 207–214 (1994).

    Google Scholar 

  51. Vollbrecht E, Veit B, Sinha N, Hake S: The developmental gene Knotted-1 is a member of a maize homeobox gene family. Nature 350: 241–243 (1991).

    Google Scholar 

  52. Vollbrecht E, Kerstetter R, Lowe B, Veit B, Hake S: Homeobox genes in plant development: mutational and molecular analysis. In: Spadlling AC (ed) Evolutionary Conservation of Developmental Mechanisms, pp. 111–123. Wiley-Liss, New York (1993).

    Google Scholar 

  53. von Arnim AG, Deng XW: Light inactivation of Arabidopsis photomorphogenic repressor COP1 involves a cell-specific regulation of its nucleocytoplasmic partioning. Cell 79: 1035–1045 (1994).

    Google Scholar 

  54. Wolberger C, Vershon AK, Liu B, Johnson AD, Pabo CO: Crystal structure of a MATα2 homeodomain-Operator complex suggests a general model for homeodomain-DNA interactions. Cell 67: 517–528 (1991).

    Google Scholar 

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Meisel, L., Lam, E. The conserved ELK-homeodomain of KNOTTED-1 contains two regions that signal nuclear localization. Plant Mol Biol 30, 1–14 (1996). https://doi.org/10.1007/BF00017799

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