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Genome-wide identification and expression profiling of genes encoding universal stress proteins (USP) identify multi-stress responsive USP genes in Arabidopsis thaliana

  • Monika Bhuria
  • Parul Goel
  • Sanjay Kumar
  • Anil Kumar SinghEmail author
Original Article
  • 2 Downloads

Abstract

Universal stress proteins (USPs) are stress-responsive proteins conserved among various organisms, including bacteria, plants and metazoans. However, in plants, the function of most of the USPs remains largely unknown. In the present study, we have identified 53 USP domain-containing proteins encoded by 41 genes in the Arabidopsis genome. Based on the presence of additional protein kinase or tyrosine kinase domain, the nomenclature has been provided to these proteins. Comprehensive in silico expression profiling of AtUSPs under various developmental stages revealed that most of the genes are expressed in a tissue-specific manner. Under abiotic stresses, AtUSP9 and AtUSP12 were identified as multi-stress responsive in both shoot and root tissues. Interestingly, AtUSP9 was also induced under various pathogens and elicitor treatments. The expression analysis of USP genes under abiotic stresses using qRT-PCR correlated well with in silico expression analysis. Thus, the present study provides a blueprint for the functional characterization of AtUSPs to ascertain their role under stress conditions. Moreover, AtUSP9 and AtUSP12 may also be used to engineer plants with improved tolerance against multiple stresses.

Keywords

Abiotic stresses Arabidopsis Universal stress protein Multi-stress responsive In silico expression 

Notes

Acknowledgements

We thank the Council of Scientific and Industrial Research (CSIR) for funding in the form of network Project PlaGen (BSC0107). MB and PG thanks CSIR for providing JRF and SRF fellowships. This manuscript represents CSIR-IHBT Communication No. 3921.

Compliance with ethical standards

Conflict of interest

The authors declare that they have no conflict of interest.

Supplementary material

40502_2019_468_MOESM1_ESM.pdf (31 kb)
Supplementary material 1 (PDF 31 kb).

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Copyright information

© Indian Society for Plant Physiology 2019

Authors and Affiliations

  1. 1.Department of BiotechnologyCSIR-Institute of Himalayan Bioresource TechnologyPalampurIndia
  2. 2.Academy of Scientific and Innovative ResearchNew DelhiIndia
  3. 3.School of Genetic EngineeringICAR-Indian Institute of Agricultural BiotechnologyRanchiIndia

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