Brazilian Journal of Botany

, Volume 37, Issue 3, pp 353–356 | Cite as

Transferability and characterization of nuclear microsatellite markers in populations of Annona coriacea (Annonaceae), a tree from the Brazilian cerrado

  • Priciane Cristina Correa Ribeiro
  • Larissa Areal de Carvalho Muller
  • José Pires Lemos-Filho
  • Maria Bernadete Lovato
Short Communication
  • 153 Downloads

Abstract

Annona coriacea Mart. (Annonaceae), known commonly as araticum, is a widely distributed tree in the cerrado (a savanna vegetation). Its ethnobotanical value is attributed to the consumption of its fruits and the pharmacological proprieties associated with different parts of the plant. The rapid replacement of natural areas of the cerrado with agricultural lands is a strong threat to the species. Knowledge of the genetic diversity of natural populations can help develop in situ preservation strategies. This study is aimed to transfer and characterize 10 nuclear microsatellites previously developed in Annona crassiflora to A. coriacea. Using these markers, genetic diversity was estimated in three populations from the cerrado core area, comprising a total of 55 individuals. Eight of these co-dominant markers were amplified in A. coriacea and seven were polymorphic, showing a number of alleles ranging from 5 to 19 across all loci. The populations showed similar levels of genetic diversity, with allelic richness ranging from 5.99 to 6.29, the mean observed heterozygosity ranged from 0.607 to 0.748 and the mean expected heterozygosity ranging from 0.696 to 0.715. These markers were shown to be appropriate for studies on population genetics and evolution of A. coriacea, which could contribute to the establishment of conservation and sustainable exploitation strategies for the species.

Keywords

Araticum Conservation genetics Heterologous primer SSR 

Notes

Acknowledgments

We thank the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) for the first author’s PhD Scholarship, and the Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG; APQ-00671-11) and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq; 475331/2012-5) for financial support.

References

  1. Almeida SP, Proença CEB, Ribeiro JF (1998) Cerrado: espécies vegetais úteis. Embrapa, PlanaltinaGoogle Scholar
  2. Barbalho SM, Goulart RA, Farinazzi-Machado MV, Souza FSS, Bueno MCS, Guiguer PL, Araujo EC, Groppo MA (2012) Annona sp: plants with multiple applications as alternative medicine—a review. Curr Bioact Compd 8:277–286CrossRefGoogle Scholar
  3. Barbará T, Palma-Silva C, Paggi GM, Bered F, Fay MF, Lexer C (2007) Cross-species transfer of nuclear microsatellite markers: potential and limitations. Mol Ecol 16:3759–3767PubMedCrossRefGoogle Scholar
  4. Bermejo A, Figadere B, Zafra-Polo MC, Barrachina I, Estornell E, Cortes D (2005) Acetogenins from Annonaceae: recent progress in isolation, synthesis and mechanisms of action. Nat Prod Rep 22:269–303PubMedCrossRefGoogle Scholar
  5. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50PubMedCentralGoogle Scholar
  6. Fagundes FA, Oliveira LB, Cunha LC, Valadares MC (2005) Annona coriacea induz efeito genotóxico em camundongos. Rev Bras Farmacogn 2:24–29Google Scholar
  7. Gottsberger G (1999) Pollination and evolution in neotropical Annonaceae. Plant Spec Biol 14:143–152CrossRefGoogle Scholar
  8. Goudet J (2001) FSTAT version 2.9.3.2: a program to estimate and test gene diversities and fixation indices. Institute of Ecology, Lausanne, Switzerland. http://www2.unil.ch/popgen/softwares/fstat.htm. Accessed 31 Jan 2013
  9. Klink AC, Machado RB (2005) Conservation of the Brazilian Cerrado. Conserv Biol 19:707–713CrossRefGoogle Scholar
  10. Lavor P, van den Berg C, Versieux LM (2013) Transferability of 10 nuclear microsatellite primers to Vriesea minarum (Bromeliacea), a narrowly endemic and threatened species from Brazil. Braz J Bot 36:165–168CrossRefGoogle Scholar
  11. Moreno AC, Marchelli P, Vendramin GG, Gallo LA (2011) Cross transferability of SSRs to five species of Araucariaceae: a useful tool for population genetic studies in Araucaria araucana. For Syst 20:303–314Google Scholar
  12. Myers NRA, Mittermeier CG, Mittermeier GA, Fonseca B, Kent J (2000) Biodiversity hotspots for conservation priorities. Nature 403:853–858PubMedCrossRefGoogle Scholar
  13. Pereira MF (2007) Desenvolvimento de marcadores moleculares SSR e caracterização genética de populações naturais de Annona crassiflora Mart. do estado de Goiás, Thesis, Universidade Federal de GoiásGoogle Scholar
  14. Pereira MF, Bandeira LF, Blanco JV, Ciampi AY, Coelho SG (2008) Development of microsatellite markers in Annona crassiflora Mart., a Brazilian Cerrado fruit tree species. Mol Ecol Resour 8:1329–1331PubMedCrossRefGoogle Scholar
  15. Petit RJ, El Mousadik A, Pons O (1998) Identifying populations for conservation on the basis of genetic markers. Conserv Biol 12:844–855CrossRefGoogle Scholar
  16. Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18:233–234PubMedCrossRefGoogle Scholar
  17. Soares TN, Sant’Ana LL, Oliveira LK, Telles MPC, Collevatti RG (2013) Transferability and characterization of microssatellite loci in Anacardium humile A. St. Hil. (Anacardiaceae). Genet Mol Res 12:3146–3149PubMedCrossRefGoogle Scholar
  18. Souza HAV, Muller LAC, Brandão RL, Lovato MB (2012) Isolation of high quality and polysaccharide-free DNA from leaves of Dimorphandra mollis (Leguminosae), a tree from the Brazilian Cerrado. Genet Mol Res 11:756–764PubMedCrossRefGoogle Scholar
  19. Van Oosterhout C, Hutchison WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538Google Scholar

Copyright information

© Botanical Society of Sao Paulo 2014

Authors and Affiliations

  • Priciane Cristina Correa Ribeiro
    • 1
  • Larissa Areal de Carvalho Muller
    • 1
  • José Pires Lemos-Filho
    • 2
  • Maria Bernadete Lovato
    • 1
  1. 1.Departamento de Biologia Geral, Instituto de Ciências BiológicasUniversidade Federal de Minas GeraisBelo HorizonteBrazil
  2. 2.Departamento de Botânica, Instituto de Ciências BiológicasUniversidade Federal de Minas GeraisBelo HorizonteBrazil

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