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Phylogenetic analyses and evolutionary relationships of Saraca asoca with their allied taxa (Tribe-Detarieae) based on the chloroplast matK gene

  • Jayita Saha
  • Kamala GuptaEmail author
  • Bhaskar GuptaEmail author
Original Article

Abstract

Saraca asoca (Roxb.) Wilde, (Ashok) is a plant native to India and is popular for its anti-cancer, anti-menorrhagic, anti-oxytocic, anti-microbial activities having extended uses in ayurveda, unani and homeopathy. Partial chloroplast matK gene (900 bp) was PCR amplified, sequenced and used to investigate the evolutionary inter- relationships of Indian Saraca asoca with other members of the tribe Detarieae belonging to the subfamily Caesalpinioideae under the family Leguminosae. The sequence analysis of chloroplast matK belonging to 70 taxa exhibited 649 conserved sites, 244 variable sites and 119 parsimony informative sites. Average composition of nucleotides among taxa were found to be approximately, A-30.5 %, T-37.3 %, G-14.5 %, C-17.7 % and the transition/transversion ratio was 0.77, while the overall mean distance was 0.022 ± 0.002 on the basis of the number of substitutions. These analyses indicate that Saraca asoca may have passed through mostly synonymous substitution during evolution. Moreover, it is observed that the transitional substitution is more pronounced in 3rd codon position whereas transversions are saturated among all three codon positions. Eurypetalum tessmannii showed highest Disparity Index (DI = 0.06) with Saraca asoca. The close relationship of Saraca asoca was established with Saraca palembanica, Saraca declinata, Endertia spectabilis and Lysidice rhodostegia.

Keywords

Detarieae Disparity index MaturaseMaximum likelihood MEGA Saraca asoca 

Abbreviations

ITS

Internal transcribed spacer

K2P

Kimura-2-Parameter

matK

Maturase K

MEGA

Molecular evolutionary genetics analysis

ML

Maximum likelihood

NCBI

National Center for Biotechnology Information

rbcL

Ribulose-bisphosphate carboxylase large-subunit

Ts

Transition

Tv

Transversion

Notes

Acknowledgments

The authors acknowledge the support of technical facilities available at Presidency University. Financial assistance from the Department of Biotechnology (DBT-RGYI) and the Department of Science and Technology (DST-SERB FAST Track) (Govt. of India) are also gratefully acknowledged. Authors thank the anonymous reviewers for their valuable comments and suggestions to improve our manuscript.

Supplementary material

13562_2013_237_MOESM1_ESM.docx (20 kb)
Table S1 (DOCX 19 kb)
13562_2013_237_MOESM2_ESM.docx (46 kb)
Fig. S1 (DOCX 46 kb)

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Copyright information

© Society for Plant Biochemistry and Biotechnology 2013

Authors and Affiliations

  1. 1.Department of BotanyPresidency UniversityKolkataIndia
  2. 2.Department of Biotechnology, Molecular Biology LaboratoryPresidency UniversityKolkataIndia

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