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Journal of Applied Genetics

, Volume 59, Issue 3, pp 279–280 | Cite as

Correction to: Identification of novel mutations in FFPE lung adenocarcinomas using DEPArray sorting technology and next-generation sequencing

  • Ji Won Lee
  • Jong-Yeon Shin
  • Jeong-Sun SeoEmail author
Correction
  • 496 Downloads

Correction to: Journal of Applied Genetics 2018

 https://doi.org/10.1007/s13353-018-0439-4

In the original article, part of Table 1 headings and entries were missing. The correct Table is as shown below. The original article has been corrected.
Table 1

Somatic mutations identified using sorted cell sequencing

Sample

Gene

Position

Ref

Alt

Type of alteration

NM number

AA change

Provean prediction

SIFT prediction

dbSNP ID

COSMIC ID

EXAC

1000 Genome

Unsorted cell sequencing

Sorted cell sequencing

#3

EGFR

chr7:55259515

T

G

missense

NM_005228

p.L858R

Deleterious

Deleterious

rs121434568

COSM6224

  

Detected

Detected

#3

GNAQ

chr9:80409491

C

frameshift deletion

NM_002072

p.G208 fs

      

Not detected

Detected

#5

PTEN

chr10:89624259

A

frameshift insertion

NM_000314

p.R11fs

      

Not detected

Detected

#6

CTNNB1

chr3:41266100

T

G

missense

NM_001098209

p.S33A

Deleterious

Deleterious

 

COSM5683

  

Detected

Detected

#6

EGFR

chr7:55242487

C

frameshift deletion

NM_005228

p.P753fs

      

Detected

Detected

#6

PTEN

chr10:89624259

A

frameshift insertion

NM_000314

p.R11fs

      

Not detected

Detected

#6

RB1

chr13:49033902

T

C

missense

NM_000321

p.I680T

Deleterious

Deleterious

    

Not detected

Detected

#6

TP53

chr17:7577082

C

G

missense

NM_001126115

p.E154Q

Deleterious

Deleterious

 

COSM1480057

  

Not detected

Detected

#8

KRAS

chr12:25398284

C

T

missense

NM_004985

p.G12D

Deleterious

Deleterious

rs121913529

COSM521

Reported

 

Detected

Detected

#8

RB1

chr13:48941675

A

frameshift insertion

NM_000321

p.K329 fs

      

Not detected

Detected

#8

SMAD4

chr18:48575161

T

frameshift insertion

NM_005359

p.F119 fs

      

Not detected

Detected

#9

IDH1

chr2:209113160

T

frameshift deletion

NM_001282386

p.N116 fs

      

Not detected

Detected

#9

RB1

chr13:48942687

A

frameshift deletion

NM_000321

p.R358fs

      

Not detected

Detected

#10

TP53

chr17:7577534

C

A

missense

NM_001126115

p.R117S

Deleterious

Deleterious

rs28934571

COSM131478

  

Detected

Detected

#12

KRAS

chr12:25398284

C

A

missense

NM_004985

p.G12 V

Deleterious

Deleterious

rs121913529

COSM1140133

  

Detected

Detected

#12

CDKN2A

chr9:21971125

A

frameshift insertion

NM_000077

p.L78 fs

      

Not detected

Detected

#14

CTNNB1

chr3:41266101

C

G

missense

NM_001098209

p.S33C

Deleterious

Deleterious

rs121913400

COSM5677

  

Detected

Detected

#17

TP53

chr17:7578398

G

frameshift insertion

NM_001126115

p.H46fs

      

Not detected

Detected

#18

TP53

chr17:7577538

C

T

missense

NM_001126115

p.R116Q

Deleterious

Deleterious

rs11540652

COSM99021

Reported

 

Detected

Detected

#20

EGFR

chr7:55259515

T

G

missense

NM_005228

p.L858R

Deleterious

Deleterious

rs121434568

COSM6224

  

Detected

Detected

#20

PTEN

chr10:89692866

A

C

missense

NM_000314

p.N117 T

Neutral

Tolerated

    

Detected

Detected

#21

KIT

chr4:55599301

T

C

silent

NM_000222

p.C809C

      

Detected

Detected

#21

APC

chr5:112175423

C

T

nonsense

NM_001127511

p.Q1360X

  

rs121913329

COSM18862

  

Detected

Detected

#21

EGFR

chr7:55259515

T

G

missense

NM_005228

p.L858R

Deleterious

Deleterious

rs121434568

COSM6224

  

Detected

Detected

#24

PIK3CA

chr3:178916857

T

frameshift deletion

NM_006218

p.F82 fs

  

rs141098973

   

Detected

Detected

#24

HRAS

chr11:534294

C

frameshift deletion

NM_001130442

p.G10 fs

      

Not detected

Detected

#25

EGFR

chr7:55259515

T

G

missense

NM_005228

p.L858R

Deleterious

Deleterious

rs121434568

COSM6224

  

Detected

Detected

#27

NRAS

chr1:115256529

T

C

missense

NM_002524

p.Q61R

Deleterious

Deleterious

rs11554290

COSM584

  

Detected

Detected

#27

TP53

chr17:7578203

C

A

missense

NM_001126115

p.V84 L

Deleterious

Deleterious

 

COSM1386669

  

Detected

Detected

#28

JAK3

chr19:17945697

G

T

silent

NM_000215

p.G721G

      

Detected

Detected

#29

TP53

chr17:7577108

C

A

missense

NM_001126115

p.C145F

Deleterious

Deleterious

 

COSM562338

Reported

 

Detected

Detected

#29

PTEN

chr10:89624259

A

frameshift insertion

NM_000314

p.R11fs

      

Not detected

Detected

#31

KRAS

chr12:25398284

C

A

missense

NM_004985

p.G12 V

Deleterious

Deleterious

rs121913529

COSM1140133

  

Detected

Detected

#31

TP53

chr17:7578215

A

frameshift deletion

NM_001126115

p.F80 fs

   

COSM44358

  

Not detected

Detected

Ref seq, reference sequence; Alt seq, alternate sequence;AA, amino acid

Copyright information

© Institute of Plant Genetics, Polish Academy of Sciences, Poznan 2018

Authors and Affiliations

  • Ji Won Lee
    • 1
    • 2
    • 3
  • Jong-Yeon Shin
    • 2
    • 4
  • Jeong-Sun Seo
    • 1
    • 2
    • 3
    • 4
    Email author
  1. 1.Gongwu Genomic Medicine Institute (G2MI), Medical Research CenterSeoul National University Bundang HospitalSeongnamsiRepublic of Korea
  2. 2.Genomic Medicine Institute (GMI), Medical Research CenterSeoul National UniversitySeoulRepublic of Korea
  3. 3.Department of Biomedical SciencesSeoul National University College of MedicineSeoulRepublic of Korea
  4. 4.Macrogen Genome Institute, Medical Research CenterSeoul National University Bundang HospitalSeongnamsiRepublic of Korea

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