Botryosphaeriales associated with stem blight and dieback of blueberry (Vaccinium spp.) in New South Wales and Western Australia
- 119 Downloads
Abstract
Stem blight and dieback caused by species of the Botryosphaeriales are important diseases of blueberry worldwide. In recent years, stem blight and dieback symptoms have been increasingly observed affecting blueberry production in Australia. Thirty samples were collected from symptomatic plants in an orchard at Corindi NSW, a major blueberry growing region. In addition, samples from symptomatic blueberry plants were submitted by growers to the Plant Health Diagnostic Service, NSW Department of Primary Industries from eight orchards in New South Wales (NSW), and a single orchard in Western Australia (WA). Culture isolations, DNA sequencing and pathogenicity testing were undertaken to determine the species causing the disease. Fifty-two isolates were recovered in total, forty-eight from NSW, and four from WA. A multi-locus sequencing approach was used to assist species identification including the internal transcribed spacer region of rDNA including 5.8S (ITS), partial translation elongation factor 1-alpha (tef1-α), and DNA-directed RNA polymerase II second largest subunit (rpb2). Eight species from three genera were identified; the most common was Neofusicoccum parvum (n = 34), followed by N. kwambonambiense (n = 7), N. occulatum (n = 5), L. theobromae (n = 2), Botryosphaeria dothidea (n = 1), N. australe (n = 1), N. macroclavatum (n = 1) and Lasiodiplodia pseudotheobromae (n = 1). The pathogenicity testing showed all isolates produced lesions on blueberry stems. This study provides the first survey of Botryosphaeriales causing blueberry stem blight and dieback in Australia, and is a valuable resource for plant pathologists and growers trying to manage the disease.
Keywords
Botryosphaeriales Botryosphaeria Stem blight Blueberry VacciniumNotes
Acknowledgements
We appreciate the support of the Australian Blueberry Growers for enabling access to their orchards to collect samples and provide advice. Thank you to Karren Cowan of the Plant Pathology Herbarium, Orange for depositing cultures and providing DAR numbers and to Andrew Daley and Brenda Gorrie from the Plant Health Diagnostic Service at EMAI, NSW DPI for providing additional isolates.
References
- Akinsanmi F, Searle C and Drenth A (2015). Botryosphaeriaceae associated with macadamia branch die-back is becoming a significant pathogen in Australia. In: APS annual meeting, Pasadena, CA, United States, (4–5). 1–5 August, 2015Google Scholar
- Alves A, Crous PW, Correia A, Phillips AJL (2008) Morphological and molecular data reveal cryptic speciation in Lasiodiplodia theobromae. Fungal Divers 28:1–13Google Scholar
- Barradas C, Phillips AJL, Correia A, Diogo E, Bragança H, Alves A (2016) Diversity and potential impact of Botryosphaeriaceae species associated with Eucalyptus globulus plantations in Portugal. Eur J Plant Pathol 146:245–257CrossRefGoogle Scholar
- Billones RG, Jones EE, Ridgway HJ, Jaspers MV (2010) First report of Neofusicoccum macroclavatum as a canker pathogen of grapevine in New Zealand. Plant Dis 94:1504CrossRefGoogle Scholar
- Burgess TI, Sakalidis ML, Hardy GESJ (2006) Gene flow of the canker pathogen Botyrosphaeria australis between Eucalyptus globulus plantations and native eucalypt forests in Western Australia. Austral Ecol 31:559–566CrossRefGoogle Scholar
- Carbone I, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91:553–556CrossRefGoogle Scholar
- Chen SF, Morgan DP, Hasey JK, Anderson K, Michailides TJ (2014) Phylogeny, morphology, distribution, and pathogenicity of Botryosphaeriaceae and Diaporthaceae from English walnut in California. Plant Dis 98:636–652PubMedCrossRefGoogle Scholar
- Choi I-Y, Sharma PK, Cheong S-S (2012) First report of Neofusicoccum parvum associated with bark dieback of blueberry in Korea. Plant Pathol J 28:217CrossRefGoogle Scholar
- Cline WO (1994) Infection of cold-injured blueberry stems by Botryosphaeria dothidea. Plant Dis 78:1010CrossRefGoogle Scholar
- Creswell TC, Milholland RD (1987) Responses of blueberry genotypes to infection by Botryosphaeria dothidea. Plant Dis 71:710–713CrossRefGoogle Scholar
- Cruywagen EM, Slippers B, Roux J, Wingfield MJ (2016). Phylogenetic species recognition and hybridization in Botryosphaeriaceae: a case study of Lasiodiplodia on baobabs in Africa. Fungal Biol. Available online 3 August 2016. https://doi.org/10.1016/j.funbio.2016.07.014
- Cunnington JH, Priest MJ, Powney RA, Cother NJ (2007) Diversity of Botryosphaeria species on horticultural plants in Victoria and new South Wales. Australas Plant Pathol 36:157–159. https://doi.org/10.1071/AP07002 CrossRefGoogle Scholar
- Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9:772PubMedPubMedCentralCrossRefGoogle Scholar
- Espinoza JG, Briceño EX, Chávez ER, Úrbez-Torres JR, Latorre BA (2009) Neofusicoccum spp. associated with stem canker and dieback of blueberry in Chile. Plant Dis 93:1187–1194. https://doi.org/10.1094/PDIS-93-11-1187 CrossRefGoogle Scholar
- Glass NL, Donaldson GC (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl Environ Microbiol 61:1323–1330PubMedPubMedCentralGoogle Scholar
- Horticulture Innovation Australia Limited (2017). The Australian horticulture statistics handbook 2015/2016. Horticulture innovation Australia limited, Sydney AustraliaGoogle Scholar
- Inderbitzin P, Bostock RM, Trouillas FP, Michailides TJ (2017) A six locus phylogeny reveals high species diversity in Botryosphaeriaceae from California almond. Mycologia 102(6):1350–1368. https://doi.org/10.3852/10-006 CrossRefGoogle Scholar
- Katoh K, Misawa K, Kuma KI, Miyata T (2002) MAFFT v7.017. A novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059–3066PubMedPubMedCentralCrossRefGoogle Scholar
- Kumar S, Stecher G, Tamura K (2015) MEGA7: molecular evolutionary genetics analysis version 7.0. Mol Biol Evol 33:1870–1874CrossRefGoogle Scholar
- Marsberg A, Kemler M, Jami F, Nage JH, Postma-Smidt A, Naidoo S, Wingfield MJ, Crous PW, Spatafora JW, Hesse CN, Robbertse B, Slippers B (2016) Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health. Mol Plant Pathol 18:477–488PubMedCrossRefGoogle Scholar
- Milholland RD (1972) Histopathology and pathogenicity of Botryosphaeria dothidea on blueberry stems. Phytopathology 62:654–660CrossRefGoogle Scholar
- Milholland RD, Galletta GJ (1969) Pathogenic variation among isolates of Botryosphaeria coriticis on blueberry. Phytopathology 59:1540–1543Google Scholar
- Nogueira AF Jr, Fischer IH, Braganca CAD, Massola NM Jr, Amorum L (2016) Identification of Botryosphaeriaceae species that cause stylar end rot of guavas and characterisation of the disease monocycle. Eur J Plant Pathol 144:271–287CrossRefGoogle Scholar
- Pavlic D, Slippers B, Coutinho TA, Wingfield MJ (2007) Botryosphaeriaceae occurring on native Syzygium cordatum in South Africa and their potential threat to Eucalyptus. Plant Pathol 56:624–636CrossRefGoogle Scholar
- Pérez SF, Meriño-Gergichevich C, Guerrero JC (2014) Detection of Neofusicoccum nonquaesitum causing dieback and dieback in highbush blueberry from southern Chile. J Soil Sci Plant Nutr 14:581–588Google Scholar
- PHDS (2017) Plant health diagnostic service. Elizabeth Macarthur Agricultural Institute, NSW Department of Primary Industries, Menangle, New South Wales. http://www.dpi.nsw.gov.au/about-us/services/laboratory-services/plant-health. Accessed 16 June 2017
- Phillips AJL (2002) Botryosphaeria species associated with diseases of grapevines in Portugal. Phytopathol Mediterr 41:3–18Google Scholar
- Phillips AJL, Oudemans PV, Correia A, Alves A (2006) Characterisation and epitypification of Botryosphaeria corticis, the cause of blueberry cane dieback. Fungal Divers 21:141–155Google Scholar
- Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, Groenewald JZ, Crous PW (2013) Botryosphaeriaceae: genera and species known from culture. Stud Mycol 76:51–167PubMedPubMedCentralCrossRefGoogle Scholar
- Pillay K, Slippers B, Wingfield MJ, Gryzenhout M (2012). Diversity and distribution of co-infecting Botryosphaeriaceae from Eucalyptus grandis and Syzygium cordatum in South AfricaGoogle Scholar
- Pitt WM, Huang R, Steel CC, Savocchia S (2013) Pathogenicity and epidemiology of Botryosphaeriaceae species isolated from grapevines in Australia. Australas Plant Pathol 42:573–582CrossRefGoogle Scholar
- R Development Core Team (2017) R: a language and environment for statistical computing. R Foundation for Statistical Computing, ViennaGoogle Scholar
- Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Baysian phylogenetic interference under mixed models. Bioinformatics 19:1572–1574PubMedCrossRefGoogle Scholar
- Sakalidis ML, Ray JD, Lanoiselet V, Hardy GESJ, Burgess TI (2011) Pathogenic Botryosphaeriaceae associated with Mangifera indica in the Kimberly region of Western Australia. Eur J Plant Pathol 130:379–391CrossRefGoogle Scholar
- Sammonds J, Billones R, Rocchetti M, Ridgway HJ, Walter M, Jaspers M (2009) Survey of blueberry farms for Botryosphaeria dieback and crown rot pathogens. NZ Plant Protection 62:238242Google Scholar
- Sessa L, Abreo E, Bettucci L, Lupo S (2016) Botryosphaeriaceae species associated with wood diseases of stone and pome fruits trees: symptoms and virulence across different hosts in Uruguay. Eur J Plant Pathol 146:519–530CrossRefGoogle Scholar
- Slippers B, Wingfield MJ (2007) Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact. Fungal Biol Rev 21:90–106CrossRefGoogle Scholar
- Slippers B, Crous PW, Jami F, Groenewald JZ, Wingfield MJ (2017) Diversity in the Botryosphaeriales: looking back, looking forward. Fungal Biol 121:307–321PubMedCrossRefGoogle Scholar
- Smith BJ (1997). Detached stem assay to evaluate the severity of stem blight of rabbiteye blueberry (Vaccinium ashei). Sixth International Sympsosium on Vaccinium (eds. DE Yarborough and JM Smagula). Acta Horticulturae 446 ISHSGoogle Scholar
- Taylor J, Jacobson DJ, Kroken C, Kasuga T, Geiser DM, Hibbett DS, Fisher MC (2000) Phylogenetic species recognition and species concepts in Fungi. Fungal Genet Biol 31:21–32PubMedCrossRefGoogle Scholar
- Taylor K, Barber PA, Hardy GESJ, Burgess TI (2009) Botryosphaeriaceae from tuart (Eucalyptus gomphocephala) woodland, including descriptions of four new species. Mycol Res 113:337–353PubMedCrossRefGoogle Scholar
- Tennakoon KMS, Ridgway HJ, Jaspers MJ, Jones EE (2017) Botryosphaeriaceae species associated with blueberry dieback and sources of primary inoculum in propagation nurseries in New Zealand. Eur J Plant Pathol. https://doi.org/10.1007/s10658-017-1283-9
- Urbez-Torres JR, Gubler WD (2009) Pathogenicity of Botryosphaeriaceae species isolated from grapevine cankers in California. Plant Dis 93:584–592CrossRefGoogle Scholar
- Urbez-Torres JR, Leavitt GM, Voegel TM, Gubler WD (2006) Identification and distribution of Botryosphaeria spp. associated with grapevine cankers in California. Plant Dis 90:1490–1503CrossRefGoogle Scholar
- White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innes MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR Protocols: a guide to methods and applications. Academic, San Diego, pp 315–322Google Scholar
- Whitelaw-Weckert MA, Rahman L, Appleby LM, Hall A, Clark AC, Waite H, Hardie WJ (2013) Co-infection by Botryosphaeriaceae and spp. fungi during propagation causes decline of young grafted grapevines. Plant Pathol 62(6):1226–1237. https://doi.org/10.1111/ppa.12059 CrossRefGoogle Scholar
- Wright AF (2011) Fungi in Botryosphaeriaceae causing stem blight in the southeast and latent infection in southern highbush blueberry propagative material. Phytopathology 101:S194Google Scholar
- Wright AF, Harmon PF (2010) Identification of species in the Botryosphaeriaceae family causing stem blight on southern highbush blueberry in Florida. Plant Dis 94:966–971CrossRefGoogle Scholar
- Xu C, Zhang H, Zhou Z, Hu T, Wang S, Wang Y, Cao K (2015) Identification and distribution of Botryosphaeriaceae species associated with blueberry stem blight in China. Eur J Plant Pathol 143:737–752CrossRefGoogle Scholar
- Yang T, Groenewald JZ, Cheewangkoon R, Jami F, Abdollazadeh J, Lombard L and Crous PW (2016). Families, genera and species of Botryosphaeriales. Fungal Biology. Available online November 2016. https://doi.org/10.1016/jfunbio.2016.11.001
- Yeats C, Gillings MR (1998) Rapid purification of DNA from soil for molecular biodiversity analysis. Lett Appl Microbiol 27:49–53CrossRefGoogle Scholar
- Yu L, Impaprasert R, Zhao JR, Xu SG, Wu (2013) Stem die-back of highbush blueberries caused by Neofusicoccum parvum in China. New Dis Rep 27:3CrossRefGoogle Scholar
- Zlatković M, Keča N, Wingfield MJ, Jami F, Slippers B (2016) Botryosphaeriaceae associated with the die-back of ornamental trees in the western Balkans. Antonie Van Leeuwenhoek 109:543–564PubMedCrossRefGoogle Scholar